Job Description P15640 Confidence 100.00% Date Wed Jan 25 15:20:39 GMT 2012 Rank 34 Aligned Residues 286 % Identity 15% Template c1ehiB_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine:d-lactate ligase; PDBTitle: d-alanine:d-lactate ligase (lmddl2) of vancomycin-resistant2 leuconostoc mesenteroides Resolution 2.38 Å

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		2	.	.	.	.	.	.	.										10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.															.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.															.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	L	V	I	G	N	G	.	.	.	.	.	.	.	.	.	G	R	E	H	A	L	A	W	K	A	A	Q	S	P	.	L	V	E	T	V	F	V	A	P	G	N	A	G	T	A	L	E	P	A	L	Q	N	V	A	I	G	V	T	D	I	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.	.	.	.	.	.	.	.	.															.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.															.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	A	L	I	F	G	G	N	S	S	E	H	D	V	S	K	R	S	A	Q	N	F	Y	N	A	I	E	A	T	G	K	Y	E	I	I	V	F	A	I	A	Q	N	G	F	F	L	D	T	E	S	S	K	K	I	L	A	L	E	D	E	Q	P	I	V	D	A	F	M	K	T	V	D	A	S	D	P	L	A	R
Template Known Secondary structure										S	S	T	T																	T	T	S	S										T	T	S													T	T												T	T			T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																																																				.	.	.	.
Query SS confidence																									.	.																																																				.	.	.	.
Query Sequence		L	L	D	F	A	Q	N	E	K	I	D	L	T	I	V	G	P	E	A	P	L	V	K	.	.	G	V	V	D	T	F	R	A	A	G	L	K	I	F	G	P	T	A	G	A	A	Q	L	E	G	S	K	A	F	T	K	D	F	L	A	R	H	K	I	P	T	A	E	Y	Q	N	F	T	E	V	E	.	.	.	.
Query Conservation																									.	.																																																				.	.	.	.
Alig confidence																									.	.																																																				.	.	.	.
Template Conservation
Template Sequence		I	H	A	L	K	S	A	G	D	F	D	I	F	F	P	V	V	H	G	N	L	G	E	D	G	T	L	Q	G	L	F	K	L	L	D	K	P	Y	V	G	A	P	L	R	G	H	A	V	S	F	D	K	A	L	T	K	E	L	L	T	V	N	G	I	R	N	T	K	Y	I	V	V	D	P	E	S	A	N	N	W
Template Known Secondary structure				T	T	S	T	T				S							T	T	T	T	T	S	S	S									T	T			B	S	S											S											T	T											T	T	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		P	A	L	A	Y	L	R	E	K	G	A	P	I	V	I	K	A	D	G	L	A	A	G	K	G	V	I	V	A	M	T	L	E	E	A	E	A	A	V	H	D	M	L	A	G	N	A	F	G	D	A	G	H	R	I	V	I	E	E	F	L	D	G	.	E	E	A	S	F	I	V	M	V	D	G	E	H	V	L	P
Query Conservation																																																																	.
Alig confidence																																															.	.	.	.	.	.													.
Template Conservation																																															.	.	.	.	.	.
Template Sequence		S	W	D	K	I	V	A	E	L	G	N	I	V	F	V	K	A	A	N	Q	G	S	S	V	G	I	S	R	V	T	N	A	E	E	Y	T	E	A	L	S	D	S	F	Q	Y	.	.	.	.	.	.	D	Y	K	V	L	I	E	E	A	V	N	G	A	R	E	L	E	V	G	V	I	G	N	D	Q	P	L	V	S
Template Known Secondary structure										T		S							S	S			S	S	T	T						S												T	T	T	.	.	.	.	.	.		S																					S	S	S
Template Predicted Secondary structure																																															.	.	.	.	.	.
Template SS confidence
		565	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.							610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	T	S	Q	D	H	K	R	V	G	D	K	D	T	G	P	N	T	G	G	M	G	A	Y	S	P	A	P	V	V	T	D	D	V	H	Q	R	T	M	E	R	I	I	W	P	T	V	K	G	M	A	A	E	G	N	T	Y	T	G	F	L	Y	A	G	L	M	I	D	K	Q	G	N	P	K	V	I	E	F	N
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Sequence		E	I	G	A	H	T	V	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	P	A	Q	L	S	P	E	V	T	K	E	V	K	Q	M	A	L	D	A	Y	K	V	L	N	.	.	L	R	G	E	A	R	M	D	F	L	L	D	E	N	N	V	P	Y	L	G	E	P	N
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S																						T	T	.	.													T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template SS confidence
		639	640	.	.	.	.	.	.	.																					.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.			.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.
		289	290	.	.				.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		C	R	F	G	.	.	.	D	P	E	T	Q	P	I	M	L	R	M	K	S	D	L	V	E	L	C	L	A	A	C
Query Conservation						.	.	.
Alig confidence						.	.	.
Template Conservation
Template Sequence		T	L	P	G	F	T	N	M	S	L	F	K	R	L	W	D	Y	S	D	I	N	N	A	K	L	V	D	M	L	I
Template Known Secondary structure		S	S				S	T	T	S	G	G	G	T	T	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions