Job Description P15640 Confidence 100.00% Date Wed Jan 25 15:20:39 GMT 2012 Rank 37 Aligned Residues 299 % Identity 15% Template c1e4eB_ PDB info PDB header:ligase Chain: B: PDB Molecule:vancomycin/teicoplanin a-type resistance protein vana; PDBTitle: d-alanyl-d-lacate ligase Resolution 2.5 Å

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		1	.	.	.	.	.	.	.	.	10										.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.												.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Query Sequence		M	K	V	L	V	I	G	N	G	G	.	.	.	.	.	.	.	.	.	R	E	H	A	L	A	W	K	A	A	Q	S	P	L	V	E	T	V	F	V	A	P	G	N	A	.	.	.	.	.	.	.	.	.	.	.	G	T	A	L	E	P	A	L	Q	N	V	A	I	G	V	T	D	I	.	.	.	.	.	P	A
Query Conservation												.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.												.	.													.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template Conservation																																.	.
Template Sequence		I	K	V	A	I	L	F	G	G	C	S	E	E	H	D	V	S	V	K	S	A	I	E	I	A	A	N	I	N	K	.	.	E	K	Y	E	P	L	Y	I	G	I	T	K	S	G	V	W	K	M	C	E	K	P	C	A	E	W	E	N	E	N	C	Y	S	A	V	L	S	P	D	K	K	M	H	G	L	L	V	K
Template Known Secondary structure											S	S	T	T													T	T	S		T	.	.	T	T										T	T	S						S	S		S	T	T				T	T										T	T	T
Template Predicted Secondary structure																																.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		L	L	D	F	A	Q	N	E	K	I	D	L	T	I	V	G	P	E	A	P	L	V	K	.	.	G	V	V	D	T	F	R	A	A	G	L	K	I	F	G	P	T	A	G	A	A	Q	L	E	G	S	K	A	F	T	K	D	F	L	A	R	H	K	I	P	T	A	E	Y	Q	N	F	T	E	V	E	P	A	L	A
Query Conservation																									.	.
Alig confidence																									.	.																																																						.	.
Template Conservation																																																																																.	.
Template Sequence		K	N	H	E	Y	E	I	N	H	V	D	V	A	F	S	A	L	H	G	K	S	G	E	D	G	S	I	Q	G	L	F	E	L	S	G	I	P	F	V	G	C	D	I	Q	S	S	A	I	C	M	D	K	S	L	T	Y	I	V	A	K	N	A	G	I	A	T	P	A	F	W	V	I	N	K	D	D	R	P	.	.
Template Known Secondary structure		S	S	S	S							S								S	T	T	T	T	S	S										T			B	S	S											S											T	T											S	S				.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	R	E	K	G	A	P	I	V	I	K	A	D	G	L	A	A	G	K	G	V	I	V	A	M	T	L	E	E	A	E	A	A	V	H	D	M	L	A	G	N	A	F	G	D	A	G	H	R	I	V	I	E	E	F	L	D	G	E	E	A	S	F	I	V	M	V	D	G	E	H	V	L	P	M	A	T	S	Q
Query Conservation
Alig confidence																																								.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.
Template Sequence		V	A	A	T	F	T	Y	P	V	F	V	K	P	A	R	S	G	S	S	F	G	V	K	K	V	N	S	A	D	E	L	D	Y	A	I	E	S	A	.	.	.	.	.	.	R	Q	Y	D	S	K	I	L	I	E	Q	A	V	S	G	C	E	V	G	C	A	V	L	G	N	S	A	A	L	V	V	G	E	V	D	Q
Template Known Secondary structure			G	G	G	S		S	S						S	S			T	T	T	T						S	G	G	G									.	.	.	.	.	.	T	T	T		S	S									S											T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.							.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		214	.	.	.	.							.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.
Query Sequence		D	H	K	R	V	.	.	.	.	.	.	G	D	K	D	T	G	P	N	T	G	G	M	G	A	Y	S	P	A	P	V	V	T	D	D	V	H	Q	R	T	M	E	R	I	I	W	P	T	V	K	G	M	A	A	E	G	N	T	Y	T	G	F	L	Y	A	G	L	M	I	D	K	Q	G	N	P	K	V	I	E	F
Query Conservation							.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																				.	.	.	.	.																						.	.
Template Conservation																																.	.	.	.	.																						.	.
Template Sequence		I	R	L	Q	Y	G	I	F	R	I	H	Q	E	V	E	P	E	K	G	S	E	N	A	V	I	T	V	P	A	D	.	.	.	.	.	L	S	A	E	E	R	G	R	I	Q	E	T	V	K	K	I	Y	K	T	L	G	.	.	C	R	G	L	A	R	V	D	M	F	L	Q	D	R	G	R	I	V	L	N	E	V
Template Known Secondary structure					S	S	S				G	G	G	S	S	S	G	G	G			S	S					S	S		S	.	.	.	.	.	S																			T	T	.	.													T	T
Template Predicted Secondary structure																																.	.	.	.	.																						.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.						.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.			.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		288	.	290	.	.				.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310				.	.	.	.	.	.
Predicted Secondary structure							.	.	.																			.	.	.
Query SS confidence							.	.	.																			.	.	.
Query Sequence		N	C	R	F	G	.	.	.	D	P	E	T	Q	P	I	M	L	R	M	K	S	D	L	V	E	L	.	.	.	C	L	A	A	C	E
Query Conservation							.	.	.																			.	.	.
Alig confidence							.	.	.																			.	.	.
Template Conservation
Template Sequence		N	T	L	P	G	F	T	S	Y	S	R	Y	P	R	M	M	A	A	A	G	I	S	L	P	E	L	I	D	R	L	I	V	L	A	L
Template Known Secondary structure			S	S				S	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions