Return to main results Retrieve Phyre Job Id

Job DescriptionP0A940
Confidence25.42%DateThu Jan 5 11:09:19 GMT 2012
Rank15Aligned Residues43
% Identity16%Templatec3pjvD_
PDB info PDB header:lyaseChain: D: PDB Molecule:cyclic dimeric gmp binding protein; PDBTitle: structure of pseudomonas fluorescence lapd periplasmic domain
Resolution1.77 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   55....60.........70......... 80.........90.......
Predicted Secondary structure 





.



Query SS confidence 
























.

















Query Sequence  NDEDISNTIRALFATGNFEDVRVLR. DGDTLLVQVKERPTIASI
Query Conservation          
  
   
 
  
    .    
   
 
 
 
  
Alig confidence 
























.

















Template Conservation 
 
  
  
 
 

 
 
  
 
 
   
  
  
        
Template Sequence  DPAXVELLVSSIFDSGYYSSIRVVDLKTDQTIVERNGIPAVTNV
Template Known Secondary structure 
TTS

S
TTT




S



Template Predicted Secondary structure 
















Template SS confidence 











































   5960.........70.........80.........90.........100..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions