Job Description P0A940 Confidence 2.56% Date Thu Jan 5 11:09:19 GMT 2012 Rank 90 Aligned Residues 112 % Identity 15% Template c3nb3C_ PDB info PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components Resolution 19.00 Å

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		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.				.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.							.	.	.	.	.	.	.	490
Predicted Secondary structure																				.	.	.																																														.	.	.	.	.	.
Query SS confidence																				.	.	.																																														.	.	.	.	.	.
Query Sequence		E	R	N	T	G	S	F	N	F	G	I	G	Y	G	T	E	S	G	.	.	.	V	S	F	Q	A	G	V	Q	Q	D	N	W	L	G	T	G	Y	A	V	G	I	N	G	T	K	N	D	Y	Q	T	Y	A	E	L	S	V	T	N	P	Y	F	T	V	D	G	.	.	.	.	.	.	V	S	L	G	G	R	L	F
Query Conservation																				.	.	.																																														.	.	.	.	.	.
Alig confidence																				.	.	.																																														.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	H	E	N	K	L	G	A	G	A	F	G	G	Y	Q	V	N	P	Y	V	G	F	E	M	G	Y	D	W	L	G	R	M	P	Y	A	Y	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	I	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W
Template Known Secondary structure			T	T																													T	T																																S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	D	F	Q	A	D	D	A	D	L	S	D	Y	T	N	K	S	Y	G	T	D	V	T	L	G	F	P	I	N	E	Y	N	S	L	R	A	G	L	G	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	D	T	Y	S	N	V	Y	G	K	N	H	D	T	G	V	S	P	V	F	A	G	G	V	E	Y	A	I	T	P	E	I	A	T	R	L	E	Y	Q	W
Template Known Secondary structure								S	S	S																						T	T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions