Job Description P0A940 Confidence 100.00% Date Thu Jan 5 11:09:19 GMT 2012 Rank 5 Aligned Residues 236 % Identity 17% Template c3mc8A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:alr2269 protein; PDBTitle: potra1-3 of the periplasmic domain of omp85 from anabaena Resolution 2.59 Å

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		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	A	E	I	Q	Q	I	N	I	V	G	N	H	A	F	T	T	D	E	L	I	S	H	F	Q	L	R	D	E	V	P	W	W	N	V	V	G	D	R	K	Y	Q	K	Q	K	L	A	G	D	L	E	T	L	R	S	Y	Y	L	D	R	G	Y	A	R	F	N	I	D	S	T	Q	V	S	L	T	P	D	K	K
Query Conservation
Alig confidence																																.	.	.	.	.																				.	.	.	.								.	.	.	.
Template Conservation																																.	.	.	.	.																				.	.	.	.								.	.	.	.
Template Sequence		P	R	V	L	V	S	E	V	L	V	R	P	Q	S	G	Q	L	T	P	E	L	E	T	Q	V	Y	N	V	I	R	.	.	.	.	.	T	Q	P	G	R	T	T	T	R	S	Q	L	Q	E	D	I	N	A	I	.	.	.	.	F	G	T	G	F	F	S	.	.	.	.	N	V	Q	A	S	P	E	D	T	P	L
Template Known Secondary structure														S	S	S																.	.	.	.	.			T	T	S															.	.	.	.		T	T	S				.	.	.	.										T	T
Template Predicted Secondary structure																																.	.	.	.	.																				.	.	.	.								.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.						.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.					.	.	270	.	.	.	.					.	.	.	.	.	280	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.					.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		G	I	Y	V	T	V	N	I	T	E	G	D	Q	Y	K	.	.	.	.	L	S	G	V	E	V	S	G	N	L	A	G	H	S	A	E	I	E	Q	L	T	K	I	E	P	G	E	L	Y	N	G	T	K	V	T	K	M	E	D	D	I	K	K	L	L	G	R	Y	G	Y	A	Y	P	R	V	Q	S	M	P	E	I
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.
Template Conservation
Template Sequence		G	V	R	V	S	F	I	V	Q	P	N	P	V	L	S	K	V	E	I	Q	A	N	P	G	T	N	V	P	S	V	L	P	Q	A	T	A	D	E	I	F	R	A	Q	Y	G	K	I	L	N	L	R	D	L	Q	E	G	I	K	E	L	T	K	R	Y	Q	D	Q	G	Y	V	L	A	N	V	V	G	A	P	Q	V
Template Known Secondary structure														B									S	T	T	S	S				S	S		T								G	G	G		S	S	B																				T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		329	330	.	.										.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.
Query Sequence		N	D	A	D	.	.	.	.	.	.	.	.	.	K	T	V	K	L	R	V	N	V	D	A	G	N	R	F	Y	V	R	K	I	R	F	E	G	N	D	T	S	K	D	A	V	L	R	R	E	M	R	Q	M	E	G	A	W	L	G	S	D	L	V	D	Q	G	K	E	R	L	N	R	L	G	F	F	E	T	V	D
Query Conservation						.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	N	G	V	V	T	L	Q	V	A	E	G	V	V	E	N	I	S	V	R	F	R	N	K	E	G	Q	D	V	N	E	Q	G	Q	P	I	R	G	R	T	Q	D	Y	I	I	T	R	E	V	E	L	K	P	G	Q	V	F	N	R	N	T	V	Q	K	D	L	Q	R	V	F	G	T	G	L	F	E	D	V	N
Template Known Secondary structure			T	T											B											T	T	S		S	B		T	T	S		B				S	S							T	T					T	T	S	B															T	T	S
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	T	Q	R	V	P	G	S	P	D	Q	V	D	V	V	Y	K	V	K	E	R	N
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		V	S	L	D	P	G	T	.	D	P	T	K	V	N	V	V	V	N	V	V	E	R	S
Template Known Secondary structure								S	.	S	T	T	S
Template Predicted Secondary structure									.
Template SS confidence
		446	.	.	.	450	.	.		.	.	.	.	.	.	.	460	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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