Job Description P0A940 Confidence 100.00% Date Thu Jan 5 11:09:19 GMT 2012 Rank 2 Aligned Residues 327 % Identity 100% Template c3efcA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein assembly factor yaet; PDBTitle: crystal structure of yaet periplasmic domain Resolution 3.30 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	V	V	K	D	I	H	F	E	G	L	Q	R	V	A	V	G	A	A	L	L	S	M	P	V	R	T	G	D	T	V	N	D	E	D	I	S	N	T	I	R	A	L	F	A	T	G	N	F	E	D	V	R	V	L	R	D	G	D	T	L	L	V	Q	V	K	E	R	P	T	I	A	S	I	T	F	S	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	V	V	K	D	I	H	F	E	G	L	Q	R	V	A	V	G	A	A	L	L	S	M	P	V	R	T	G	D	T	V	N	D	E	D	I	S	N	T	I	R	A	L	F	A	T	G	N	F	E	D	V	R	V	L	R	D	G	D	T	L	L	V	Q	V	K	E	R	P	T	I	A	S	I	T	F	S	G	N
Template Known Secondary structure											S			S	S	S								T		S			T	T	S				T																									S	S																			S
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	V	K	D	D	M	L	K	Q	N	L	E	A	S	G	V	R	V	G	E	S	L	D	R	T	T	I	A	D	I	E	K	G	L	E	D	F	Y	Y	S	V	G	K	Y	S	A	S	V	K	A	V	V	T	P	L	P	R	N	R	V	D	L	K	L	V	F	Q	E	G	V	S	A	E	I	Q	Q	I	N	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	S	V	K	D	D	M	L	K	Q	N	L	E	A	S	G	V	R	V	G	E	S	L	D	R	T	T	I	A	D	I	E	K	G	L	E	D	F	Y	Y	S	V	G	K	Y	S	A	S	V	K	A	V	V	T	P	L	P	R	N	R	V	D	L	K	L	V	F	Q	E	G	V	S	A	E	I	Q	Q	I	N	I
Template Known Secondary structure		T	T	S													T			S	S	S				G	G	G														T	T	T			S									B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	N	H	A	F	T	T	D	E	L	I	S	H	F	Q	L	R	D	E	V	P	W	W	N	V	V	G	D	R	K	Y	Q	K	Q	K	L	A	G	D	L	E	T	L	R	S	Y	Y	L	D	R	G	Y	A	R	F	N	I	D	S	T	Q	V	S	L	T	P	D	K	K	G	I	Y	V	T	V	N	I	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	N	H	A	F	T	T	D	E	L	I	S	H	F	Q	L	R	D	E	V	P	W	W	N	V	V	G	D	R	K	Y	Q	K	Q	K	L	A	G	D	L	E	T	L	R	S	Y	Y	L	D	R	G	Y	A	R	F	N	I	D	S	T	Q	V	S	L	T	P	D	K	K	G	I	Y	V	T	V	N	I	T	E
Template Known Secondary structure			S			S	S		T	T	T	T	G	G	G					S	S			S			S		T	T	T																					T	T		T	T												T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	Q	Y	K	L	S	G	V	E	V	S	G	N	L	A	G	H	S	A	E	I	E	Q	L	T	K	I	E	P	G	E	L	Y	N	G	T	K	V	T	K	M	E	D	D	I	K	K	L	L	G	R	Y	G	Y	A	Y	P	R	V	Q	S	M	P	E	I	N	D	A	D	K	T	V	K	L	R	V	N	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	Q	Y	K	L	S	G	V	E	V	S	G	N	L	A	G	H	S	A	E	I	E	Q	L	T	K	I	E	P	G	E	L	Y	N	G	T	K	V	T	K	M	E	D	D	I	K	K	L	L	G	R	Y	G	Y	A	Y	P	R	V	Q	S	M	P	E	I	N	D	A	D	K	T	V	K	L	R	V	N	V	D
Template Known Secondary structure													B	S			T	T								T					S	S		B																				T	T		S	S											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		343	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	N	R	F	Y	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	N	R	F	Y	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions