Job Description P37747 Confidence 99.95% Date Thu Jan 5 11:57:23 GMT 2012 Rank 34 Aligned Residues 333 % Identity 16% Template c3nrnA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pf1083; PDBTitle: crystal structure of pf1083 protein from pyrococcus furiosus,2 northeast structural genomics consortium target pfr223 Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.
Predicted Secondary structure																																																											.	.																	.	.	.
Query SS confidence																																																											.	.																	.	.	.
Query Sequence		Y	D	Y	I	I	V	G	S	G	L	F	G	A	V	C	A	N	E	L	K	K	L	N	K	K	V	L	V	I	E	K	R	N	H	I	G	G	N	A	Y	T	E	D	C	E	G	I	Q	I	H	K	Y	G	A	H	I	F	.	.	H	T	N	D	K	Y	I	W	D	Y	V	N	D	L	V	E	.	.	.	F	N
Query Conservation																																																											.	.																	.	.	.
Alig confidence																																																				.							.	.																	.	.	.
Template Conservation																																																				.
Template Sequence		X	R	A	V	V	V	G	A	G	L	G	G	L	L	A	G	A	F	L	A	R	N	G	H	E	I	I	V	L	E	K	S	A	X	I	G	G	R	F	T	N	L	P	Y	K	G	F	Q	L	S	.	T	G	A	L	H	X	I	P	H	G	E	D	G	P	L	A	H	L	L	R	I	L	G	A	K	V	E	I	V
Template Known Secondary structure								S		S													T	T								S	S	S	S	S		T	T	S	S					T	T					.	S	S	S		S			T	T	T	T	S	S										T
Template Predicted Secondary structure																																																				.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		R	F	T	N	S	P	L	A	I	Y	K	D	K	L	F	N	L	P	F	N	M	N	T	F	H	Q	M	W	G	V	K	D	P	Q	E	A	Q	N	I	I	N	A	Q	K	K	K	Y	G	D	K	V	P	E	N	L	E	E	Q	A	I	S	L	.	V	G	E	D	L	Y	Q	A	L	I	K	G	Y	T	E	K	Q
Query Conservation																																																																.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	S	N	P	K	G	K	I	L	W	E	G	K	I	F	H	Y	R	E	S	W	K	F	L	S	.	.	.	.	.	.	.	.	.	.	.	.	K	L	L	A	E	I	R	X	N	K	L	P	K	E	E	I	P	A	D	E	W	I	K	E	K	I	G	E	N	E	F	L	L	S	V	L	E	S	F	A	G	W	A
Template Known Secondary structure				S	S	S						T	T					G	G	G	G	G	G	G			.	.	.	.	.	.	.	.	.	.	.	.								T	T							S	B									T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.													.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.						.	.	.	.	210	.	.	.	.	.	.	.										.	.	220	.
Predicted Secondary structure																																																				.	.	.	.	.													.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.													.	.	.	.	.	.	.	.	.
Query Sequence		W	G	R	S	A	K	E	L	P	A	F	I	I	K	R	I	P	V	R	F	T	F	D	N	N	Y	F	S	D	R	Y	Q	G	I	P	V	G	G	Y	T	K	L	I	E	K	M	L	E	G	V	.	.	.	.	.	D	V	K	L	G	I	D	F	L	K	D	K	.	.	.	.	.	.	.	.	.	D	S	L	A
Query Conservation																																																				.	.	.	.	.													.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.																			.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.
Template Sequence		D	S	V	S	L	S	D	L	T	A	L	E	L	A	K	E	I	R	A	A	L	R	W	G	G	P	.	.	.	.	.	.	G	L	I	R	G	G	C	K	A	V	I	D	E	L	E	R	I	I	X	E	N	K	G	K	I	L	T	R	K	E	V	V	E	I	N	I	E	E	K	K	V	Y	T	R	D	N	E	E
Template Known Secondary structure			S	S		G	G	G	S	B																S		.	.	.	.	.	.				T	T															T	T	T					S	S								T	T	T	T					T	T
Template Predicted Secondary structure																												.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.							.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.													.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	A	H	R	I	I	Y	T	G	P	I	D	Q	Y	F	D	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	F	G	A	L	E	Y	R	S	L	K	F	E	T	E	R	H	E	F	P	N	F	Q	G	N	A	V	I	N	F	T	D	A	N	V	P	Y	T	R	I	I	E	H	K	H	F	D	Y	V	E
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation																																																													.	.
Template Sequence		Y	S	F	D	V	A	I	S	N	V	G	V	R	E	T	V	K	L	I	G	R	D	Y	F	D	R	D	Y	L	K	Q	V	D	S	I	E	P	S	E	G	I	K	F	N	L	A	V	P	G	E	P	R	I	G	N	T	I	V	F	.	.	T	P	G	L	X	I	N	G	F	N	E	P	S	A	L	D	K	S	L
Template Known Secondary structure					S						S											G	G	G	S										T															S	S		S	S		S	S				.	.		T	T	S	S	S						G	G	G	T		G	G	G
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.																			.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	K	H	T	V	V	T	K	E	Y	P	L	E	W	K	V	G	D	E	P	Y	Y	P	V	N	D	N	K	N	M	E	L	F	K	K	Y	R	E	L	A	S	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	V	I	F	G	G	R	L	A	E	Y	K	Y	Y	D	M	H	Q
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.
Template Sequence		A	R	E	G	Y	T	L	I	X	A	.	.	.	.	.	.	.	.	.	.	H	X	A	L	K	N	G	N	V	K	K	A	I	E	K	G	W	E	E	L	L	E	I	F	P	E	G	E	P	L	L	A	Q	V	Y	H	I	E	W	P	L	N	E	V	L	V	V	G	D	G	Y	R	P	P	G	G	I	E	V	D
Template Known Secondary structure		S		T	T							.	.	.	.	.	.	.	.	.	.					T	T																			T	T																S	S					S	T	T				T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.											.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	S	A	A	L	Y	Q	V	K	N	I	M	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	A	L	G	V	X	K	A	L	E	K	L	N
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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