Job Description P37747 Confidence 100.00% Date Thu Jan 5 11:57:23 GMT 2012 Rank 13 Aligned Residues 335 % Identity 18% Template c3i6dA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: crystal structure of ppo from bacillus subtilis with af Resolution 2.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.							.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.																																																				.	.
Query SS confidence																							.	.	.	.	.	.																																																				.	.
Query Sequence		D	Y	I	I	V	G	S	G	L	F	G	A	V	C	A	N	E	L	K	K	L	.	.	.	.	.	.	N	K	K	V	L	V	I	E	K	R	N	H	I	G	G	N	A	Y	T	E	D	C	E	G	I	Q	I	H	K	Y	G	A	H	I	F	H	T	N	D	K	Y	I	W	D	Y	V	N	D	L	V	E	.	.
Query Conservation																							.	.	.	.	.	.																																																				.	.
Alig confidence																							.	.	.	.	.	.																													.																							.	.
Template Conservation																																																									.
Template Sequence		H	V	V	I	I	G	G	G	I	T	G	L	A	A	A	F	Y	M	E	K	E	I	K	E	K	N	L	P	L	E	L	T	L	V	E	A	S	P	R	V	G	G	K	I	Q	T	V	K	K	D	G	Y	I	I	E	.	R	G	P	D	S	F	L	E	R	K	K	S	A	P	Q	L	V	K	D	L	G	L	E	H
Template Known Secondary structure									S															T	T	T	T		S								S	S	S	S	S		T	T							T	T					.	S	S						T	T		T									T	T			T
Template Predicted Secondary structure																																																									.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
				75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	F	N	R	F	T	N	S	P	L	A	I	Y	K	D	K	L	F	N	L	P	F	N	M	N	T	F	H	Q	M	W	G	V	K	D	P	Q	E	A	Q	N	I	I	N	A	Q	K	K	K	Y	G	D	K	V	P	E	N	L	E	E	Q	A	I	S	L	V	G	E	D	L	Y	Q	A	L	I	K	G	Y	T
Query Conservation		.	.
Alig confidence		.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	V	N	N	A	T	G	Q	S	Y	V	L	V	N	R	T	L	H	P	M	P	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	A	R	A	A	M	D	F	I	L	P	A	S	K	T	K	D	D	Q	S	L	G	E	F	F	R	R	R	V	G	D	E	V	V	E	N	L	I	E	P	L	L
Template Known Secondary structure		T														S	S									.	.	.	.	.	.	.	.	.	.	.	.	.		S									S				S	S	S	S			B									S								T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.														110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.												.
Predicted Secondary structure																																																							.	.	.													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	Q	W	G	R	S	A	K	E	L	P	A	F	I	I	K	R	I	P	V	R	F	T	F	D	N	N	Y	F	S	D	R	Y	Q	G	I	P	V	G	G	Y	T	K	L	I	E	K	M	L	E	G	V	.	.	.	D	V	K	L	G	I	D	F	L	K	D	K	.	.	.	.	.	.	.	.	.	.	.	D
Query Conservation																																																							.	.	.													.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	G	I	Y	A	G	D	I	D	K	L	S	L	M	S	T	F	P	Q	F	Y	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	L	S	T	G	L	Q	T	L	V	E	E	I	E	K	Q	L	K	L	T	K	V	Y	K	G	T	K	V	T	K	L	S	H	S	G	S	C	Y	S	L	E	L	D	N
Template Known Secondary structure				T	T		S		T	T	T	B	B						G	G	G				.	.	.	.	.	.	.	.	.	.	.	.				T	T		T										T			S						S										S	S	S						S	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.													.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.									.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.																													.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.																													.	.	.	.
Query Sequence		S	L	A	S	K	A	H	R	I	I	Y	T	G	P	I	D	Q	Y	.	.	.	.	.	.	.	.	F	D	Y	R	F	G	A	L	E	Y	R	S	L	K	F	E	T	E	R	H	E	F	P	N	F	Q	G	N	.	.	.	.	A	V	I	N	F	T	D	A	N	V	P	Y	T	R	I	I	E	H	K	H	F	D
Query Conservation																				.	.	.	.	.	.	.	.																													.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation
Template Sequence		G	V	T	L	D	A	D	S	V	I	V	T	A	P	H	K	A	A	A	G	M	L	S	E	L	P	A	I	S	H	L	K	N	M	H	S	T	S	V	A	N	V	A	L	G	F	P	E	G	S	V	Q	M	E	H	E	G	T	G	F	V	I	S	R	N	S	D	F	A	I	T	A	C	T	W	T	N	K	K	W
Template Known Secondary structure		S						S						S									T	T	T	S	T	T						T														S	S	T	T				S	S		S	S						S	T	T			S
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.																																					310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence		Y	V	E	T	K	H	T	V	V	T	K	E	Y	P	L	E	W	K	V	G	D	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Y	P	V	N	D	N	K	N	M	E	L	F	K	K	Y	R	E	L	A	.
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		P	H	A	A	P	E	G	K	T	L	L	R	A	Y	V	G	K	A	G	D	E	S	I	V	D	L	S	D	N	D	I	I	N	I	V	L	E	D	L	K	K	V	M	N	I	N	G	E	P	E	M	T	C	V	T	R	W	H	E	S	M	P	Q	Y	H	V	G	H	K	Q	R	I	K	E	L	R	E	A	L	A
Template Known Secondary structure		G	G	G	S		T	T											S	S			G	G	G	T	S														G	G	G	S				S			S															B	T	T
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	E	D	K	V	I	F	G	G	R	L	A	E	Y	K	Y	Y	D	M	H	Q	V	I	S	A	A	L	Y	Q	V	K	N	I	M	S
Query Conservation
Alig confidence												.	.
Template Conservation												.	.
Template Sequence		S	A	Y	P	G	V	Y	M	T	G	.	.	A	S	F	E	G	V	G	I	P	D	C	I	D	Q	G	K	A	A	V	S	D	A	L	T
Template Known Secondary structure				S	T	T					S	.	.	T	T	T	S			S
Template Predicted Secondary structure												.	.
Template SS confidence
		433	.	.	.	.	.	.	440	.	.			.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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