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Job DescriptionP37747
Confidence100.00%DateThu Jan 5 11:57:23 GMT 2012
Rank7Aligned Residues361
% Identity12%Templatec2ivdA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of protoporphyrinogen oxidase from myxococcus2 xanthus with acifluorfen
Resolution2.3 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.....
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Query Sequence  YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKYIWDYVNDLVEF. . . . . .
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Template Sequence  MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVE. QGPNSFLDREPATRALAAALNLEGRIRAA
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BTTT


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Query Sequence  NRFTNSPLAIYKDKLFNLPFNMNTFHQMWGVKDPQEAQNIINAQKKKYGDKVPENLEEQAISLVGEDLYQALIKGYTEKQ
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Template Sequence  DPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGI
Template Known Secondary structure 
SS


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GGGG




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Query Sequence  WGRSAKELPAFIIKRIP. . . . . . . . . . . . . . . . . . . VRFTFDNNYFSDRYQGIPVGGYTKLIEKMLEGV. . DVKLGIDFL
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Template Sequence  YAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVE
Template Known Secondary structure 


TTTBB
SST



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   169170.........180.........190.........200.........210.........220.........230.........240........
 
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Query Sequence  KDK. . . . . . . . . . . . DSLASKAHRIIYTGPIDQY. . . . . . . . . . FDYRFGALEYRSLKFETERHEFPNFQGN. . . AVINF
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Template Sequence  GLAREGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVP
Template Known Secondary structure 



TT
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TTT
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   253......260.........270.........280.........290.........300.........310.........320.........330..
 
   270.........280.........290.........300........ .310...
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Query Sequence  TDANVPYTRIIEHKHFDYVETKHTVVTKEYPLEWKVGDE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PYYPV
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Template Conservation                             
                           
                 
      
Template Sequence  AEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAREELKALAGVTARPSFTRVFRWPLGIPQ
Template Known Secondary structure  GGG

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GGGBSTT

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GGGGGS



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   335....340.........350.........360.........370.........380.........390.........400.........410....
 
   314.....320.........330.........340.........350.........360.....
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Query Sequence  NDNKNMELFKKYRELASREDKVIFGGRLAEYKYYDMHQVISAALYQVKNIMS
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Template Sequence  YNLGHLERVAAIDAALQRLPGLHLIG. . NAYKGVGLNDCIRNAAQLADALVA
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BTTTSTT
S..TTTS

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   415....420.........430.........440 .........450.........460....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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