Job Description P69902 Confidence 23.22% Date Thu Jan 5 12:12:16 GMT 2012 Rank 299 Aligned Residues 141 % Identity 14% Template c2zmeA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar-sorting protein snf8; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Resolution 2.90 Å

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		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.									320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																			.																													.	.	.	.	.	.	.	.
Query SS confidence																			.																													.	.	.	.	.	.	.	.
Query Sequence		Q	N	W	E	N	T	C	K	A	I	G	K	P	E	W	I	T	.	D	P	A	Y	S	T	A	H	A	R	Q	P	H	I	F	D	I	F	A	E	I	E	K	Y	T	V	T	I	.	.	.	.	.	.	.	.	D	K	H	E	A	V	A	Y	L	T	Q	F	D	I	P	C	A	P	V	L	S	M	K	E	I	S
Query Conservation																			.																													.	.	.	.	.	.	.	.
Alig confidence																			.																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Q	F	Q	D	M	C	A	T	I	G	V	D	P	L	A	S	G	K	G	F	W	S	E	M	L	G	V	G	D	F	Y	Y	E	L	G	V	Q	I	I	E	V	C	L	A	L	K	H	R	N	G	G	L	I	T	L	E	E	L	H	Q	Q	V	L	K	G	R	G	K	F	A	Q	D	V	S	Q	D	D	L	I
Template Known Secondary structure												T			T	T	S		T	T	S																															T	T															T		S	S
Template Predicted Secondary structure
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		346	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.		400	.	.	.					.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure				.																																					.																	.					.	.	.	.
Query SS confidence				.																																					.																	.					.	.	.	.
Query Sequence		L	D	.	P	S	L	R	Q	S	G	S	V	V	E	V	E	Q	P	L	R	G	K	Y	L	T	V	G	C	P	M	K	F	S	A	F	T	P	D	I	.	K	A	A	P	L	L	G	E	H	T	A	A	V	L	Q	E	.	L	G	Y	S	.	.	.	.	D	D	E	I	A	A	M	K	Q	N	H	A	I
Query Conservation				.																																					.																	.					.	.	.	.
Alig confidence				.															.																						.																	.					.	.	.	.
Template Conservation																			.
Template Sequence		R	A	I	K	K	L	K	A	L	G	T	G	F	G	I	I	P	.	V	G	G	T	Y	L	I	Q	S	V	P	A	E	L	N	M	D	H	T	V	V	L	Q	L	A	E	K	N	G	Y	V	T	V	S	E	I	K	A	S	L	K	W	E	T	E	R	A	R	Q	V	L	E	H	L	L	K	E	G	L	A
Template Known Secondary structure								G	G	G		S	S						.		T	T							S																T	T	T	S																												T	T	S
Template Predicted Secondary structure																			.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions