Job Description P69902 Confidence 40.56% Date Thu Jan 5 12:12:16 GMT 2012 Rank 189 Aligned Residues 94 % Identity 21% Template c2vs1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:uncharacterized rna methyltransferase pyrab10780; PDBTitle: the crystal structure of pyrococcus abyssi trna (uracil-54,2 c5)-methyltransferase in complex with s-adenosyl-l-3 homocysteine Resolution 2.1 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence		L	Q	G	I	K	V	L	D	F	T	G	V	Q	S	G	P	S	C	T	Q	M	L	A	W	F	G	A	D	V	I	K	I	E	R	P	G	V	G	D	V	T	R	H	Q	L	R	D	I	P	D	I	D	A	L	Y	F	T	M	L	N	.	.	.	S	N	K	R	S	I	E	L	N	T	K	T	A	E	G	K	E
Query Conservation																																																														.	.	.
Alig confidence															.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.													.	.	.	.	.
Template Conservation															.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template Sequence		V	E	G	E	K	I	L	D	M	Y	S	G	V	.	.	G	T	F	G	I	Y	L	A	K	R	G	F	N	V	K	G	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	E	F	A	I	E	M	A	R	R	N	V	E	I	N	N	V	D	A	E	F	E	V	A	S	D	.	.	.	.	.
Template Known Secondary structure				S	S						T		T	T	.	.	T								T	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S															T	T										T	.	.	.	.	.
Template Predicted Secondary structure															.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.																300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		V	M	E	K	L	I	R	E	A	D	I	L	V	E	N	F	H	P	G	A	I	D	H	M	G	F	T	W	E	H	I	Q	E	I	N	P	.	.	.	.	R	L	I	F	G	S	I	K	G
Query Conservation																																						.	.	.	.
Alig confidence		.																	.	.	.	.	.															.	.	.	.
Template Conservation		.																	.	.	.	.	.
Template Sequence		.	R	E	V	S	V	K	G	F	D	T	V	I	V	D	P	P	.	.	.	.	.	R	A	G	L	H	P	R	L	V	K	R	L	N	R	E	K	P	G	V	I	V	Y	V	S	C	N	P
Template Known Secondary structure		.	T	T				T	T		S								.	.	.	.	.	T	T		S														S							S
Template Predicted Secondary structure		.																	.	.	.	.	.
Template SS confidence
			327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.						.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions