Return to main results Retrieve Phyre Job Id

Job DescriptionP14175
Confidence97.30%DateThu Jan 5 11:33:55 GMT 2012
Rank204Aligned Residues150
% Identity11%Templatec3bgwD_
PDB info PDB header:replicationChain: D: PDB Molecule:dnab-like replicative helicase; PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
Resolution3.91 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90.........100.........110.........120...
Predicted Secondary structure 





































Query SS confidence 















































































Query Sequence  VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTV
Query Conservation 
  

  
  


  
 
 

 





  
 
      
 
   
                  
  
     
    

Alig confidence 














































...





























Template Conservation 

    
   
 
  
 
 

 


 
   

   
  
  

  
 ...

       
  
   

            
Template Sequence  LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL. . . EMGKKENIKRLIVTAGSINAQKIKAARRDF
Template Known Secondary structure  SSB
SS

SSSSTT

S...SS
S


TTGGGT
Template Predicted Secondary structure 
















...












Template SS confidence 















































































   185....190.........200.........210.........220.........230. ........240.........250.........260.
 
   124.....130.........140.........150.........160.........170.........180........
Predicted Secondary structure  ...............

































Query SS confidence  . . . . . . . . . . . . . . .
































































Query Sequence  . . . . . . . . . . . . . . . LDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLM
Query Conservation  ...............                         
               



  


 

 

   
 



Alig confidence  ...............





























...........................







Template Conservation                
    
 
          
   
        ...........................     


Template Sequence  ASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNP. . . . . . . . . . . . . . . . . . . . . . . . . . . GKRVIVMI
Template Known Secondary structure 

S
TS


SS
BS
...........................SS
Template Predicted Secondary structure 










...........................


Template SS confidence 















































































   262.......270.........280.........290.........300...... ...310....
 
   189190 .........200.........210.........220...
Predicted Secondary structure 

.......










Query SS confidence 

. . . . . . .
































Query Sequence  DE. . . . . . . AFSALDPLIRTEMQDELVKLQAKHQRTIVFISH
Query Conservation 

.......

  

      
   
  
    
 


 


Alig confidence 

.......
































Template Conservation 
 
                  
   

 

    
 

   
Template Sequence  DYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQ
Template Known Secondary structure 
SSSSB
S
SSS
T
Template Predicted Secondary structure 













Template SS confidence 









































   315....320.........330.........340.........350......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions