Return to main results Retrieve Phyre Job Id

Job DescriptionP14175
Confidence100.00%DateThu Jan 5 11:33:55 GMT 2012
Rank1Aligned Residues234
% Identity39%Templatec2yyzA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein
Resolution2.11 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR
Query Conservation         
 
                       
  
   

  

  
  


  
 
 

 





  
 
      
Alig confidence 













........................









































Template Conservation 
 
    

  
  ........................   
  


 
  

   
 
 








  
 
   
  
Template Sequence  PSIRVVNLKKYFGK. . . . . . . . . . . . . . . . . . . . . . . . VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS
Template Known Secondary structure 

TT........................
TT

STTSSTSS

S
Template Predicted Secondary structure 


........................


















Template SS confidence 















































































   2.......10..... ....20.........30.........40.........50.......
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
Predicted Secondary structure 






































Query SS confidence 















































































Query Sequence  GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP
Query Conservation 
 
   
                  
  
     
    

                         
             
Alig confidence 
















......
























































Template Conservation 
 
   
  
       ......  
  
 
        

  
                      
    
        
Template Sequence  GEIYFDDVLVNDIPPKY. . . . . . REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP
Template Known Secondary structure  TT
TTS
GGG......TT
SS



TTS
GGGSSS
STTTT
GGGTTS
G
Template Predicted Secondary structure 





......































Template SS confidence 















































































   58.60.........70.... .....80.........90.........100.........110.........120.........130.
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGE
Query Conservation    



  


 

 

   
 







  

      
   
  
    
 


 


    
  
 
 
 

  
 
Alig confidence 















































































Template Conservation    

 
  


 




   
 







  

          
  
    
 


 


   
     


 

  
 
Template Sequence  TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGK
Template Known Secondary structure  GGS
TT

SSTTTTS


S

STT
Template Predicted Secondary structure 






















Template SS confidence 















































































   132.......140.........150.........160.........170.........180.........190.........200.........210.
 
   243......250.........260......
Predicted Secondary structure 



Query SS confidence 























Query Sequence  VVQVGTPDEILNNPANDYVRTFFR
Query Conservation 

  
   
         
  
  
Alig confidence 























Template Conservation 
   
   

   
     
   
Template Sequence  LVQYGTPDEVYDSPKNMFVASFIG
Template Known Secondary structure 
S
SBSS
Template Predicted Secondary structure 








Template SS confidence 























   212.......220.........230.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions