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Job DescriptionP14175
Confidence99.53%DateThu Jan 5 11:33:55 GMT 2012
Rank77Aligned Residues166
% Identity15%Templatec2v8qE_
PDB info PDB header:transferaseChain: E: PDB Molecule:5'-amp-activated protein kinase subunit gamma-1; PDBTitle: crystal structure of the regulatory fragment of mammalian2 ampk in complexes with amp
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   228.230.........240 .........250.........260.........270.........280.........290.........300.....
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Query Sequence  AMRIGDRIAIMQN. . GEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQD
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Template Sequence  IRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYAN. . . IAMVRTTTPVYVALGIFVQ
Template Known Secondary structure  T
S

TTT


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SSS

GGGGSBT
SB
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TT
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   145....150.........160.........170.........180.........190.........200.. .......210.........220.
 
   306...310.........320.........330........ .340.........350.........360......... 370..
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Query Sequence  EDREYGYVIERGNKFVGAVSIDSLKTALTQQQG. . . . . . . . . . . . LDAALIDAPLAVDAQTPLSELLSHVGQAPCA. VPV
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Template Sequence  HRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVV
Template Known Secondary structure 

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TTSBGGGTGGGGGSS




SSBGGG

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TTSBT
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   222.......230.........240.........250.........260.........270.........280.........290.........300.
 
   373......380.........390......
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Query Sequence  VDEDQQYVGIISKGMLLRALDREG
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Template Sequence  VDEHDVVKGIVSLSDILQALVLTG
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   302.......310.........320.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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