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Job DescriptionP14175
Confidence100.00%DateThu Jan 5 11:33:55 GMT 2012
Rank49Aligned Residues210
% Identity23%Templatec2pzfB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:cystic fibrosis transmembrane conductance regulator; PDBTitle: minimal human cftr first nucleotide binding domain as a head-to-tail2 dimer with delta f508
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR
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Template Sequence  TEVVMENVTAFW. . . . . . . . . . . . . . . . . . . . . . EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE
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STT

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   390.........400. ........410.........420.........430.........440.......
 
   83......90.........100.........110.........120.........130.........140... ......150.. .......
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Query Sequence  GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERRE. KALDALRQV. . GLENYAH
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Template Sequence  GKIKHSG. . . . . . . . . . . . . . . . . RISFCSQFSWIMPG. TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG
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   480...... ...490.........500 .........510.........520.........530.........540.
 
   160.........170.........180.........190.........200.........210.........220.........230.........
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Query Sequence  SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQ
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Template Sequence  EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA. NKTRILVTSKMEHLK. KADKILILH
Template Known Secondary structure  TT
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   543......550.........560.........570.........580.........590...... ...600.........610. ........620
 
   240.........250....
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Query Sequence  NGEVVQVGTPDEILN
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Template Sequence  EGSSYFYGTFSELQN
Template Known Secondary structure  TT
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   621........630.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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