Job Description P24169 Confidence 99.50% Date Thu Jan 5 11:40:44 GMT 2012 Rank 200 Aligned Residues 288 % Identity 15% Template d1vefa1 SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.35

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		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.																						.	.																												.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.																						.	.																												.	.	.	.	.	.	.	.	.
Query Sequence		H	E	G	A	P	C	I	A	Q	Q	H	A	A	K	V	F	N	A	D	.	.	K	T	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	L	.	.	T	P	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	G	A	T	.	.	.	.	.	.	.	.	.
Query Conservation																					.	.																						.	.																												.	.	.	.	.	.	.	.	.
Alig confidence																					.	.																						.	.																			.									.	.	.	.	.	.	.	.	.
Template Conservation																																																																.
Template Sequence		P	T	P	M	R	G	E	F	Y	R	T	L	T	A	I	L	P	P	E	L	N	R	V	F	P	V	N	S	G	T	E	A	N	E	A	A	L	K	F	A	R	A	H	T	G	R	K	K	F	V	A	A	M	R	G	F	S	G	R	T	M	G	.	S	L	S	V	T	W	E	P	K	Y	R	E	P	F	L	P	L
Template Known Secondary structure																T	S		T	T								S	S																	S								T	T					S	S			.				T								G	G	G		S
Template Predicted Secondary structure																																																																.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
				239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.							.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure		.	.																																																												.	.	.	.	.	.
Query SS confidence		.	.																																																												.	.	.	.	.	.
Query Sequence		.	.	P	V	Y	L	E	T	A	R	N	P	Y	G	F	I	G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	T	Y	D	G	T	I	.	.	.	.	.	.	Y	N	A	R	Q	V	V	D	K	I	G	H	L
Query Conservation		.	.																																																												.	.	.	.	.	.
Alig confidence		.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	P	V	E	F	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	D	V	E	A	L	K	R	A	V	D	E	E	T	A	.	.	.	.	.	.	.	.	.	.	.	A	V	I	L	E	P	V	Q	G	E	G	G	V	R	P	A	T	P	E	F	L	R	A	A	R	E	I	T	Q	E	K
Template Known Secondary structure		S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T											T	T			.	.	.	.	.	.	.	.	.	.	.						S			T	T	T	T	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.															.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.												.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		C	D	Y	I	L	F	D	S	A	W	V	G	Y	E	Q	F	I	P	M	M	A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M
Query Conservation
Alig confidence																			.	.	.														.	.	.	.										.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.														.	.	.	.										.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	L	L	I	L	D	E	I	Q	T	G	M	G	R	T	G	.	.	.	K	R	F	A	F	E	H	F	G	I	V	P	D	.	.	.	.	I	L	T	L	A	K	A	L	G	.	G	G	V	P	L	G	V	A	V	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	E	V	A	R	S	M	P
Template Known Secondary structure		T								T	T	T	T	T	T	T	T	S	.	.	.	S	S	S	T					T				S	.	.	.	.						G	G	G	G	.	T	T	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	S
Template Predicted Secondary structure																			.	.	.														.	.	.	.										.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.															.	.	270	.	.	.	.	.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure
Query SS confidence
Query Sequence		M	H	A	S	T	S	P	F	Y	P	L	F	A	A	L	N	I	N	A	K	M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F	F
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	G	G	H	G	T	T	F	G	G	N	P	L	A	M	A	A	G	V	A	A	I	R	Y	L	E	R	T	R	L	W	E	R	A	A	E	L	G	P	W	F	M	E	K	L	R	A	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	S	S			S	S	T	T																			T	T																	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	V	P	G	E	H	W	H	S	F	E	G	Y	A	E	N	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	A	N	F	L	R	E	N	G	V	V	P	E	K	C	D	L	N	S	I	L	F	L	L	T	P	A	E	D	M	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	K	I	R	E	V	R	G	M	G	L	M	V	.	.	.	G	L	E	L	K	E	K	A	A	P	Y	I	A	R	L	E	K	E	H	R	V	L	A	L	Q	A	G	P	T	V	I	R	F	L	P	P	L	V	I	E	K	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T								T	T			.	.	.					S	S		S																		S	S	T	T								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
																							326	.	.	.	330	.	.	.	.	.	.	.	.	.				340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		551	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	Q	Q	L	V	A	L	L	V	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	E	R	V	V	E	A	V	R	A	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions