 |
Job Description | P24169 | Confidence | 84.25% | Date | Thu Jan 5 11:40:44 GMT 2012 |
Rank | 250 | Aligned Residues | 56 |
% Identity | 21% | Template | d1m7xa3 |
SCOP info | TIM beta/alpha-barrel
| (Trans)glycosidases
| Amylase, catalytic domain
|
Resolution | 2.30 |
|
 |
  |   |
232 | . | . | . | . | . | . | . | 240 | . | . | . | . | |
|
|
|
. | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|  |  |  |  |  |  |
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | L | Q | A | G | A | T | P | V | Y | L | E | T | . |
. |
. |
. |
A | R | N | P | Y | G | F | I | G | G | I | D | A | H | C | F | E | E | S | Y | L | R | E | L | I | A | E | V | A | P | Q | R | A | K | E | A | R | P | F | R | L | A | V | I | Q | L | G | T | Y | D | G | T | I | Y | N | A | R | Q | V | V | D | K | I |
Query Conservation |   |
|   |
|
|
|
|   |
|
|
|
|   |
| . | . | . | . |   |   |   |   |   |
|   |
|
|   |
|   |   |   |   |
|
|   |
|   |
|   |   |   |
|   |   |   |
|   |
|
|
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|   |
|
|   |   |
|
|   |   |
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|
|   |   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|
|   |   |
|
|
|   |
|
|   |   |
|
Template Sequence |   |
A | K | W | M | G | F | T | H | L | E | L | L | P | I | N | E | H | P | F | D | G | S | W | G | Y | Q | P | T | G | L | Y | A | P | T | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | F | G | T | R | D | D | F | R | Y | F | I | D | A | A |
Template Known Secondary structure |   |
 |  |  | T | T |
| S |  |  |  |  | S |
|
|  |  |
| S |
| G | G | G | T | T | S | S |
| S |  |  |  |  |  |
| G | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
276 | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . |
  |
  |   |
308 | . | 310 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | H | L | C | D | Y | I | L | F | D |
Query Conservation |   |
|   |   |   |   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |
|
|
|
|
Template Sequence |   |
H | A | A | G | L | N | V | I | L | D |
Template Known Secondary structure |   |
 |  | T | T |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
  |   |
326 | . | . | . | 330 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|