Job Description P24169 Confidence 99.59% Date Thu Jan 5 11:40:44 GMT 2012 Rank 185 Aligned Residues 302 % Identity 10% Template d1bjna_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.30

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		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.																																												.	.
Query SS confidence																				.	.	.																																												.	.
Query Sequence		A	P	C	I	A	Q	Q	H	A	A	K	V	F	N	A	D	K	T	.	.	.	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	L	T	P	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	.	.	G	A	T	P	V	Y	L	E	T	A	R	N	P	Y
Query Conservation																				.	.	.																																												.	.
Alig confidence																				.	.	.																																						.						.	.														.
Template Conservation																																																												.																					.
Template Sequence		V	A	E	E	A	E	K	D	F	R	D	L	L	N	V	P	S	N	Y	K	V	L	F	C	H	G	G	G	R	G	Q	F	A	A	V	P	L	N	I	L	G	D	K	T	T	A	D	Y	V	D	A	G	Y	W	A	A	S	A	.	I	K	E	A	K	K	Y	C	T	P	N	V	F	D	A	K	V	T	V	D	.
Template Known Secondary structure															T			T	T							S	S															T	T									S	S							.					T	T	T	S												T	.
Template Predicted Secondary structure																																																												.																					.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	I	G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	T	Y	D	G	T	I	Y	N	A	R	Q	V	V	D	K	I	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G	Y	E	Q	F	I	P	M
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.																					.	.														.	.
Template Conservation		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.																					.	.														.	.
Template Sequence		.	.	.	.	.	.	.	.	.	G	L	R	A	V	K	P	M	R	E	W	Q	L	S	D	N	A	A	Y	.	.	.	.	.	.	.	.	.	M	H	Y	C	P	N	E	T	I	D	G	I	A	I	D	E	T	P	D	F	.	.	G	A	D	V	V	V	A	A	D	F	S	S	T	.	.	I	L	S	R	P	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T							G	G	G					S	S		S		.	.	.	.	.	.	.	.	.					S			T	T	T	T										.	.		T	T								T	T	T	.	.	T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.																					.	.														.	.
Template SS confidence
											127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.										.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.			.	180	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.			.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		M	A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M	M	H	A	S	T	S	.	.	P	F	Y	P	L	F	A	A	L	N	I
Query Conservation																																																																					.	.
Alig confidence					.	.	.	.	.	.	.	.				.	.	.	.													.	.																																				.	.
Template Conservation					.	.	.	.	.	.	.	.				.	.	.	.													.	.
Template Sequence		D	V	S	.	.	.	.	.	.	.	.	R	Y	G	.	.	.	.	V	I	Y	A	G	A	Q	N	I	G	P	A	.	.	G	L	T	I	V	I	V	R	E	D	L	L	G	K	A	N	I	A	C	P	S	I	L	D	Y	S	I	L	N	D	N	G	S	M	F	N	T	P	P	T	F	A	W	Y	L	S	G	L
Template Known Secondary structure			G	G	.	.	.	.	.	.	.	.	G		S	.	.	.	.										S	S	T	.	.	T								G	G	G		S				T	T	S		G	G	G								T	T	T		S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.				.	.	.	.													.	.
Template SS confidence
		185	.	.									.	.	190					.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		408	.	410	.	.	.	.	.	.	.		.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		N	A	K	M	H	E	G	V	S	G	.	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F	F	Q	F	V	P	G	E	H	W	H	S	F	E	G	Y	A	E
Query Conservation												.
Alig confidence												.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	K	W	L	K	A	N	G	G	V	A	E	M	D	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	D	F	Y	R	N	D	V	A	K	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T																								S	S					B		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.			.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		N	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	A	N	F	L	R	E	N	G	V	V	P	E	.	.	K	C	D	L	N	S	I	L	F	L	L	T	P	A	E	D	M	A	K	L	Q	Q	L	V	A	L	L	V	R	F	E	K
Query Conservation																																																.	.
Alig confidence		.	.	.	.															.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation		.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	R	S	R	M	N	V	P	F	Q	L	A	D	S	A	.	.	.	.	.	.	.	.	.	.	.	L	D	K	L	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	R	V	V	G	G	M	R	A	S	I	Y	N	A	M	P	L	E	G	V	K	A	L	T	D	F	M	V	E	F	E	R
Template Known Secondary structure		.	.	.	.	B		S	S							S	S	G	G	.	.	.	.	.	.	.	.	.	.	.	G											T	T					B			T	T	T		S							T	T	S
Template Predicted Secondary structure		.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						295	.	.	.	.	300	.	.	.	.	.	.	.	.												.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		565	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		360	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions