Job Description P24169 Confidence 99.54% Date Thu Jan 5 11:40:44 GMT 2012 Rank 197 Aligned Residues 335 % Identity 12% Template c3t18D_ PDB info PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. Resolution 2.86 Å

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		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.						.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		E	A	L	F	R	A	D	L	C	N	A	D	V	A	M	G	D	L	L	I	H	E	G	A	P	C	I	A	Q	Q	H	A	A	K	V	F	N	A	D	K	T	Y	.	.	.	.	.	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	L	T	P	G	D	L	V	L	F	D	R	N	N	H	K	S
Query Conservation																																												.	.	.	.	.
Alig confidence																																												.	.	.	.	.
Template Conservation
Template Sequence		P	S	V	Y	D	R	L	D	E	X	D	R	S	H	I	A	S	Y	A	P	I	E	G	E	K	D	Y	R	K	I	V	I	D	T	L	F	G	P	Y	K	P	E	G	Y	I	S	A	I	A	T	P	G	G	T	G	A	I	R	S	A	I	F	S	Y	L	D	E	G	D	P	L	I	C	H	D	Y	Y	W	A	P
Template Known Secondary structure										T	S		G	G	G	T	S	S				T	T															G	G	G			S	S								S													T	S		S	S							S	S			T
Template Predicted Secondary structure
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.				.	300	.	.
Predicted Secondary structure																																																																			.								.	.	.
Query SS confidence																																																																			.								.	.	.
Query Sequence		N	H	H	G	A	L	L	Q	A	G	A	T	P	V	Y	L	E	T	A	R	N	P	Y	G	F	I	G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	.	T	Y	D	G	T	I	Y	.	.	.	N	A	R	Q
Query Conservation																																																																			.								.	.	.
Alig confidence					.																						.	.	.	.	.																						.	.	.	.	.	.	.	.							.								.	.	.
Template Conservation					.																						.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Sequence		Y	R	K	.	I	C	E	E	F	G	R	N	F	K	T	F	E	F	F	T	D	D	F	A	F	.	.	.	.	.	N	I	D	V	Y	K	E	A	I	D	E	G	I	R	D	S	D	R	I	A	S	.	.	.	.	.	.	.	.	L	I	N	S	P	G	N	N	P	T	G	Y	S	L	S	D	E	E	W	D	E
Template Known Secondary structure					.						T									B		S	S	S	S	B	.	.	.	.	.															S		S					.	.	.	.	.	.	.	.					S	S		T	T	T
Template Predicted Secondary structure					.																						.	.	.	.	.																						.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.						.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.									180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		303	.	.	.	.	.	.							310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.			.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.																																																	.	.
Query SS confidence									.	.	.	.	.	.																																																	.	.
Query Sequence		V	V	D	K	I	G	H	.	.	.	.	.	.	L	C	D	Y	I	L	F	D	S	A	W	V	G	Y	E	Q	F	I	P	M	M	A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	.	.	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K
Query Conservation									.	.	.	.	.	.																																																	.	.
Alig confidence									.	.	.	.	.	.														.																																			.	.																.	.
Template Conservation																												.																																																				.	.
Template Sequence		V	I	T	F	L	K	E	K	A	E	D	K	D	K	K	I	T	L	I	V	D	V	A	Y	L	E	.	F	A	G	D	G	D	Q	Q	R	K	F	F	E	K	F	S	N	L	P	R	N	L	F	V	V	V	A	F	S	X	S	K	S	H	T	A	Y	G	L	R	S	G	A	A	V	G	I	S	S	S	K	.	.
Template Known Secondary structure				T	T	T	T	T	T	T	T	S	T	T										T	T		T	.	T	S	S	S	S	S	S	S	S	T	T	T	G	G	G	S	S			T	T														T		G	G	G										S			.	.
Template Predicted Secondary structure																												.																																																				.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M	M	H	A	S	T	S	P	F	Y	P	L	F	A	A	L	N	I	N	A	K	M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P
Query Conservation
Alig confidence		.	.	.	.	.																																																																			.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																																																			.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	E	I	I	E	E	F	E	A	S	L	A	H	S	A	R	C	N	W	S	N	G	T	H	A	A	Q	N	I	L	I	E	L	E	R	A	E	N	K	K	I	Y	E	Q	E	L	V	D	L	R	N	X	L	K	S	R	A	D	V	F	V	T	A	A	K	E	N	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.																		T	S	S							T	T	T	S	S	T	T	S	G	G	G	T	T																												.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.																																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
							278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F	F	Q	F	V	P	G	E	H	W	H	S	F	E	G	Y	A	E	N	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	A	N	F	L	R	E	N	G	V	V	P	E	K	C
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	T	X	I	P	Y	F	G	G	F	F	.	.	.	.	T	F	I	P	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	F	D	I	V	K	D	L	E	K	E	N	I	F	T	.	I	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T								S	S	S		.	.	.	.						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	T				.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
																											344	.	.	.	.	.	350	.	.	.	.	.					.	.	.	.	360	.															.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	N	S	I	L	F	L	L	T	P	A	E	D	M	A	K	L	Q	Q	L	V	A	L	L	V	R	F
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		S	A	K	G	I	R	V	A	I	C	.	G	V	G	E	E	K	I	P	K	L	V	Q	R	L	A	F	Y
Template Known Secondary structure			S	S						S	T	.	T	S		T	T	T
Template Predicted Secondary structure												.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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