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Job DescriptionP24169
Confidence99.34%DateThu Jan 5 11:40:44 GMT 2012
Rank221Aligned Residues313
% Identity11%Templatec3pplB_
PDB info PDB header:transferaseChain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution
Resolution1.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   170.........180......... 190.........200......... 210.........220.........230....
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Query Sequence  LIHEGAPCIAQQHAAKVFNA. DKTYFVLNGTSSSNKVVLNA. . . . . . . . . . . . . . LLTPGDLVLFDRNNHKSNHHGALLQ
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Template Sequence  YGGLDGIVDIRQIWADLLGVPVEQVLAGDASSLNIXFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFS. ITER
Template Known Secondary structure  S

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   73......80.........90.........100.........110.........120.........130.........140....... ..150.
 
   235....240.........250.........260.........270.........280.........290. ........ 300..... ...
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Query Sequence  AGATPVYLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQRAKEARPFRLAVIQLG. . TYDGTIYN. . . ARQVVD. KIG
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Template Sequence  FGFEXISVPXN. . . . . . . . . . . EDGPDXDAVEELVKNPQ. . . . . . . . . VKGXWVVPVFSNPTGFTVTEDVAKRLSAXETA
Template Known Secondary structure  TT
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TTSTT.........

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   152.......160.. .......170......... 180.........190.........200.........210.
 
   309310.........320.. .......330.........340.........350.........360.........370.........380.......
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Query Sequence  HLCDYILFDSAWVG. YEQFIPMMADCSPLLLDLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQQRYVPHKRMNN
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Template Sequence  APDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFL. . . . . . . . . . . . TSAENRKW
Template Known Secondary structure  STT

TTTT
BSSS






TT
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   212.......220.........230.........240.........250.........260.........270. ........
 
   388.390.........400.........410.........420.........430.........440.........450.........460.......
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Query Sequence  AFMMHASTSPFYPLFAALNINAKMHEGVSGRNMWMDCVVNGINARKLILDNCQHIRPFVPELVDGKPWQSYETAQIAVDL
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Template Sequence  YTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVXRKHAASLAPKFNKVLEILD. . . . . . . . . . . . . . . . . . . . SRLAEYG
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S....................GGGT
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   280.........290.........300.........310.........320.........330.. .......
 
   468.470.........480.........490.........500.........510.........520.........530. ......
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Query Sequence  RFFQFVPGEHWHSFEGYAENQYFVDPCKLLLTTPGIDARNGEYEAFGVPATILANFLRENGVVP. . . . . . . . . . EKCDLN
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Template Sequence  VAQWTVPAGGYF. . . . . . . . . . . . . . . . ISLDVVPG. . . . . . . . . . . . TASRVAELAKEAGIALTGAGSSYPLRQDPENK
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SBSS
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STT............
TT


TTTTSGGG

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   340.........350. ........ 360.........370.........380.........390.
 
   538.540.........550.........560....
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Query Sequence  SILFLLTPAEDMAKLQQLVALLVRFEK
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Template Sequence  NLRLAPS. LPPVEELEVAXDGVATCVL
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   392...... .400.........410.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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