Job Description P24169 Confidence 99.74% Date Thu Jan 5 11:40:44 GMT 2012 Rank 118 Aligned Residues 302 % Identity 15% Template c3op7A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution Resolution 1.70 Å

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		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		L	I	H	E	G	A	P	C	I	A	Q	Q	H	A	A	K	V	F	N	.	.	A	D	K	T	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	L	T	P	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	G	A	T	P	V	Y	L	E	T	A	R	N
Query Conservation																					.	.
Alig confidence																					.	.																																										.
Template Conservation																																																																.
Template Sequence		Y	G	W	I	E	G	S	P	A	F	K	K	S	V	S	Q	L	Y	T	G	V	K	P	E	Q	I	L	Q	T	N	G	A	T	G	A	N	L	L	V	L	Y	S	L	I	E	P	G	D	H	V	I	S	L	Y	P	T	Y	Q	Q	L	Y	D	.	I	P	K	S	L	G	A	E	V	D	L	W	Q	I	E	E	E
Template Known Secondary structure		S			T	T											T	T	S	S	S			G	G	G					S																T	T								S	S		T					.					T	T										G	G
Template Predicted Secondary structure																																																																.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.					.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																																															.	.	.	.
Query SS confidence																																															.	.	.	.
Query Sequence		P	Y	G	F	I	G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	T	.	.	.	.	Y	D	G	T	I	Y	N	A	R	Q	V	V	D	K	I	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G	Y
Query Conservation																																															.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.								.	.	.	.																														.
Template Conservation							.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.																																									.
Template Sequence		N	G	W	L	P	.	.	.	.	.	.	.	.	D	L	E	K	L	R	Q	L	I	R	P	T	T	K	X	.	.	.	.	.	.	.	.	.	.	I	C	I	N	N	A	N	N	P	T	G	A	V	X	D	R	T	Y	L	E	E	L	V	E	I	A	S	E	V	G	A	Y	I	L	S	D	E	V	Y	R	.	S
Template Known Secondary structure		G	T	T			.	.	.	.	.	.	.	.											T	T				.	.	.	.	.	.	.	.	.	.					S	S		T	T	T																		T	T	T									S		.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.																																									.
Template SS confidence
		137	.	.	140	.									.	.	.	.	.	.	.	.	150	.	.	.	.	.	.											.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	F	I	P	M	M	A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M	M	H	A	S	T	S	P	F	Y	P	L	F	A
Query Conservation
Alig confidence						.	.	.	.													.	.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.													.	.	.	.																										.	.	.	.	.	.	.	.	.
Template Sequence		F	S	E	L	.	.	.	.	D	V	P	S	I	I	E	V	Y	D	K	G	.	.	.	.	I	A	V	N	S	L	S	T	Y	S	L	P	G	I	R	I	G	W	V	A	A	N	H	Q	V	.	.	.	.	.	.	.	.	.	T	D	I	L	R	D	Y	R	D	Y	T	X	I	C	A	G	V	F	D	D	L	V
Template Known Secondary structure			S	S	S	.	.	.	.										T	T		.	.	.	.										S		G	G	G												.	.	.	.	.	.	.	.	.					T	T	T	G	G	G	T	T	S
Template Predicted Secondary structure						.	.	.	.													.	.	.	.																										.	.	.	.	.	.	.	.	.
Template SS confidence
		198	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.										.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	N	I	N	A	K	M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F	F	Q	F	V	P	G	E	H	W	H	S	F	E	G
Query Conservation
Alig confidence														.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	Q	L	A	L	A	H	Y	Q	E	I	L	.	.	E	R	N	R	H	I	L	E	E	N	L	A	I	L	D	Q	W	I	E	E	E	P	L	V	S	Y	I	R	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T						.	.																						T	T							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.		.	.	.	.	.	.	.	.	530	.	.	.	.					.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.														.	.	.	.
Query SS confidence																																								.														.	.	.	.
Query Sequence		Y	A	E	N	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	A	.	N	F	L	R	E	N	G	V	V	P	E	K	C	.	.	.	.	D	L	N	S	I	L	F	L	L	T	P	A	E	D	M	A	K	L	Q	Q	L	V	A	L
Query Conservation																																								.														.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.									.														.	.	.	.								.	.
Template Conservation		.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template Sequence		.	.	.	.	.	.	.	.	V	V	S	T	S	F	V	K	I	A	V	.	.	.	.	.	.	.	.	.	.	.	D	X	P	X	E	D	F	C	L	Q	L	L	Q	E	H	G	V	L	L	V	P	G	N	R	F	E	R	D	G	Y	V	R	L	.	.	G	F	A	C	E	Q	E	T	L	I	K	G	L	E	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	S	S	S									.	.	.	.	.	.	.	.	.	.	.	S	S																				G	G	G	G	T		T	T					.	.				S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template SS confidence
										304	.	.	.	.	.	310	.	.	.	.												.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		559	560	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	R	F	E	K	L	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	Q	F	L	R	R	F	D
Template Known Secondary structure							G	G	G
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions