Job Description P24169 Confidence 99.35% Date Thu Jan 5 11:40:44 GMT 2012 Rank 220 Aligned Residues 322 % Identity 15% Template c3oksB_ PDB info PDB header:transferase Chain: B: PDB Molecule:4-aminobutyrate transaminase; PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis Resolution 1.80 Å

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		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																									.	.																									.	.	.																											.	.
Query SS confidence																									.	.																									.	.	.																											.	.
Query Sequence		V	A	M	G	D	L	L	I	H	E	G	A	P	C	I	A	Q	Q	H	A	A	K	V	.	.	F	N	A	D	K	T	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	.	.	.	L	T	P	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	G	.	.
Query Conservation																									.	.																									.	.	.																											.	.
Alig confidence																									.	.									.																.	.	.																				.							.	.
Template Conservation																																			.																																						.
Template Sequence		H	T	C	F	M	V	T	P	Y	E	G	Y	V	A	V	C	E	Q	L	N	R	L	T	P	V	R	G	D	K	R	S	A	L	.	F	N	S	G	S	E	A	V	E	N	A	V	K	I	A	R	S	H	T	H	K	P	A	V	V	A	F	D	H	A	Y	H	G	R	T	N	L	.	T	M	A	L	T	A	K	V
Template Known Secondary structure				T	T	T	T	S																S	S			S	S						.		S	S																									T	T					S	S			.
Template Predicted Secondary structure																																			.																																						.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.
												237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.					300
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																										.	.							.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																										.	.							.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	A	T	P	V	Y	L	E	T	A	R	N	P	Y	G	F	I	G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	T	Y	.	.	D	G	T	I	Y	N	.	.	.	.	A
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																										.	.							.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																.	.									.	.							.	.	.	.
Template Conservation																																																											.	.
Template Sequence		M	P	Y	K	D	G	F	G	P	F	A	P	E	I	Y	R	A	P	L	S	Y	P	F	R	D	A	E	F	G	K	E	L	A	T	D	G	E	L	A	A	K	R	A	I	T	V	I	D	K	Q	I	G	A	D	N	L	A	.	.	A	V	V	I	E	P	I	Q	G	E	G	G	F	I	V	P	A	D	G	F	L
Template Known Secondary structure		T	T	T	T	T	T			S			S	S													G	G	G						T																	T		G	G	G			.	.						S	S	B	T	T	T	T		B				T	T
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	V	V	D	K	I	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G	Y	E	Q	F	I	P	M	M	A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V
Query Conservation
Alig confidence																																.	.	.											.	.	.	.						.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.											.	.	.	.						.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	T	L	L	D	W	C	R	K	N	D	V	V	F	I	A	D	E	V	Q	T	G	F	A	R	T	G	A	M	F	.	.	.	A	C	E	H	E	G	I	D	P	D	.	.	.	.	L	I	V	T	A	.	.	G	I	A	G	G	L	P	L	S	A	V	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T								T	T	T	T	T	T	T	T	S	S	S	S	.	.	.	G	G	G	T	T	T				S	.	.	.	.						.	.		T	T	T	T	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.											.	.	.	.						.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.					.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	K	R	M	N	N	A	F	M	M	H	A	S	T	S	P	F	Y	P	L	F	A	A	L	N	I	N	A	K	M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T
Query Conservation
Alig confidence		.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	R	A	E	I	M	D	S	P	H	V	S	G	L	G	G	T	Y	G	G	N	P	I	A	C	A	A	A	L	A	T	I	E	T	I	E	S	E	G	L	V	A	R	A	Q	Q	I	E	K	I	M	K	D	R	L	G	R	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.						T		S		T	T	S	S			S	S	S	S																		T	T																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.		.	510	.	.	.	.	.	.							.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
Predicted Secondary structure																																																		.									.	.	.	.	.	.
Query SS confidence																																																		.									.	.	.	.	.	.
Query Sequence		A	Q	I	A	V	D	L	R	F	F	Q	F	V	P	G	E	H	W	H	S	F	E	G	Y	A	E	N	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	R	N	G	.	E	Y	E	A	F	G	V	P	.	.	.	.	.	.	A	T	I	L	A	N	F	L	R	E	N	G	V	V	P	E	K
Query Conservation																																																		.									.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.									.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	D	D	R	I	G	D	V	R	G	R	G	A	M	I	A	M	E	L	V	K	A	G	T	T	E	P	D	A	D	L	T	K	A	L	C	A	G	A	H	A	A	G	V	I	V	L	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T								T	T							B	S	T	T	S			B															T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																	364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		534			.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		C	.	.	D	L	N	S	I	L	F	L	L	T	P	A	E	D	M	A	K	L	Q	Q	L	V	A	L	L	V	R	F	E	K
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		C	G	T	Y	G	N	V	V	R	F	L	P	P	L	S	I	G	D	D	L	L	N	E	G	L	D	V	L	E	E	V	L	R
Template Known Secondary structure				T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.

No model constructed - rank, confidence too low