Job Description P24169 Confidence 100.00% Date Thu Jan 5 11:40:44 GMT 2012 Rank 3 Aligned Residues 650 % Identity 32% Template c3n75E_ PDB info PDB header:lyase Chain: E: PDB Molecule:lysine decarboxylase, inducible; PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci Resolution 2.00 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		S	R	N	I	D	V	A	A	I	V	L	S	L	N	D	V	T	C	G	K	L	D	E	I	D	A	T	G	Y	G	I	P	V	F	I	A	T	E	N	Q	.	.	E	R	V	P	A	E	Y	L	P	R	I	S	G	V	F	E	N	C	E	S	R	R	E	F	Y	G	R	Q	L	E	T	A	A	S	H	Y	E	T
Query Conservation																																										.	.
Alig confidence																																										.	.
Template Conservation
Template Sequence		E	N	N	A	R	L	C	G	V	I	F	D	W	D	K	Y	N	L	E	L	C	E	E	I	S	K	M	N	E	N	L	P	L	Y	A	F	A	N	T	Y	S	T	L	D	V	S	L	N	D	L	R	L	Q	I	S	F	F	E	Y	A	L	G	A	A	E	D	I	A	N	K	I	K	Q	T	T	D	E	Y	I	N
Template Known Secondary structure					T	T																								T	T									T	T					G	G	G	T	T	S											T	T
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	R	P	P	F	F	R	A	L	V	D	Y	V	N	Q	G	N	S	A	F	D	C	P	G	H	Q	G	G	E	F	F	R	R	H	P	A	G	N	Q	F	V	E	Y	F	G	E	A	L	F	R	A	D	L	C	N	A	D	V	A	M	G	D	L	L	I	H	E	G	A	P	C	I	A	Q	Q	H	A	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	L	P	P	L	T	K	A	L	F	K	Y	V	R	E	G	K	Y	T	F	C	T	P	G	H	M	G	G	T	A	F	Q	K	S	P	V	G	S	L	F	Y	D	F	F	G	P	N	T	M	K	S	D	I	S	I	S	V	S	E	L	G	S	L	L	D	H	S	G	P	H	K	E	A	E	Q	Y	I	A	R
Template Known Secondary structure				S																		S		S	S	T	T	T	T	T					T	S																	T				T	T	S	G	G	G		B	T	T	T	T	B	T
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	N	A	D	K	T	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	L	T	P	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	G	A	T	P	V	Y	L	E	T	A	R	N	P	Y	G	F	I	G	G	I	D	A	H	C	F	E	E	S	Y	L
Query Conservation
Alig confidence																																															.
Template Conservation																																															.
Template Sequence		V	F	N	A	D	R	S	Y	M	V	T	N	G	T	S	T	A	N	K	I	V	G	M	Y	S	A	P	A	G	S	T	I	L	I	D	R	N	C	H	K	S	L	T	H	L	.	M	M	M	S	D	V	T	P	I	Y	F	R	P	T	R	N	A	Y	G	I	L	G	G	I	P	Q	S	E	F	Q	H	A	T	I
Template Known Secondary structure				T		S						S	S																T	T							S	S									.				S													T	T								G	G	G	G	S
Template Predicted Secondary structure																																															.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.				.	.	.	340	.	.
Predicted Secondary structure																																																																									.	.	.
Query SS confidence																																																																									.	.	.
Query Sequence		R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	T	Y	D	G	T	I	Y	N	A	R	Q	V	V	D	K	I	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G	Y	E	Q	F	I	P	M	M	A	D	C	S	P	L	.	.	.	L	L	D	L	N	E
Query Conservation																																																																									.	.	.
Alig confidence														.	.	.	.	.																														.	.																								.	.	.
Template Conservation														.	.	.	.	.																														.	.
Template Sequence		A	K	R	V	K	E	T	P	N	A	T	W	.	.	.	.	.	P	V	H	A	V	I	T	N	S	T	Y	D	G	L	L	Y	N	T	D	F	I	K	K	T	L	D	V	K	S	.	.	I	H	F	D	S	A	W	V	P	Y	T	N	F	S	P	I	Y	E	G	K	C	G	M	S	G	G	R	V	E	G	K	V
Template Known Secondary structure								S	T	T			S	.	.	.	.	.		S						S	S		T	T																S		.	.						T	T		T	T	G	G	G	S	G	G	G	T	T	S	S	T	T	S	S				T	T
Template Predicted Secondary structure														.	.	.	.	.																														.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M	M	H	A	S	T	S	P	F	Y	P	L	F	A	A	L	N	I	N	A	K	M	H	E	G	V	S	G	R	N	M	W	M
Query Conservation
Alig confidence			.	.	.	.									.																.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.									.																.	.	.	.	.	.	.	.
Template Sequence		I	.	.	.	.	Y	E	T	Q	S	T	H	L	.	L	A	A	F	S	Q	A	S	M	I	H	V	K	G	D	.	.	.	.	.	.	.	.	V	N	E	E	T	F	N	E	A	Y	M	M	H	T	T	T	S	P	H	Y	G	I	V	A	S	T	E	T	A	A	A	M	M	K	G	N	A	G	K	R	L	I	N
Template Known Secondary structure			.	.	.	.									.		S			T	T								S		.	.	.	.	.	.	.	.														S		S	S																	S
Template Predicted Secondary structure			.	.	.	.									.																.	.	.	.	.	.	.	.
Template SS confidence
		359					360	.	.	.	.	.	.	.		.	.	370	.	.	.	.	.	.	.	.	.	380	.	.									.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.						.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	.	.	.	.	.	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F	F	Q	F	V	P	G	E	H	W	H	S	F	E	G	Y	A	E	N	Q	Y	F	V	D	P	C	K	L	L
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	I	E	R	A	I	K	F	R	K	E	I	K	R	L	R	T	E	S	D	G	W	F	F	D	V	W	Q	P	D	H	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	E	C	W	P	L	R	S	D	S	T	W	H	G	F	K	N	I	D	N	E	H	M	Y	L	D	P	I	K	V	T
Template Known Secondary structure																					S	S	S						S	S		S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S						T	T			T	T			T	T			S	S	S					T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460															.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	T	P	G	I	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	A	N	F	L	R	E	N	G	V	V	P	E	K	C	D	L	N	S	I	L	F	L	L	T	P	A	E	D	M	A	K	L	Q	Q	L	V	A	L	L	V	R	F	E	K	L	L	E	S	D	A	P	L	A	E	V	L	P
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		L	L	T	P	G	M	E	.	K	D	G	T	M	S	D	F	G	I	P	A	S	I	V	A	K	Y	L	D	E	H	G	I	V	V	E	K	T	G	P	Y	N	L	L	F	L	F	S	I	G	I	D	K	T	K	A	L	S	L	L	R	A	L	T	D	F	K	R	A	F	D	L	N	L	R	V	K	N	M	L	P
Template Known Secondary structure					S	S	B		.	S	S	S		B		S	S														T	T				S				S	S								T	T																						T	T		B
Template Predicted Secondary structure									.
Template SS confidence
		493	.	.	.	.	.	.		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	Y	K	Q	H	E	E	R	Y	A	G	Y	T	L	R	Q	L	C	Q	E	M	H	D	L	Y	A	R	H	N	V	K	Q	L	Q	K	E	M	F	R	K	E	H	F	P	R	V	S	M	N	P	Q	E	A	N	Y	A	Y	L	R	G	E	V	E	L	V	R	L	P	D	A	E	G	R	I	A	A	E	G	A
Query Conservation
Alig confidence																																									.	.
Template Conservation																																									.	.
Template Sequence		S	L	Y	R	E	D	P	E	F	Y	E	N	M	R	I	Q	E	L	A	Q	N	I	H	K	L	I	V	H	H	N	L	P	D	L	M	Y	R	A	F	.	.	E	V	L	P	T	M	V	M	T	P	Y	A	A	F	Q	K	E	L	H	G	M	T	E	E	V	Y	L	D	E	M	V	G	R	I	N	A	N	M	I
Template Known Secondary structure												S	S		B															T	T										.	.		S					S	S											T	T							G	G	G		T	T		B	B		S		B
Template Predicted Secondary structure																																									.	.
Template SS confidence
		572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610			.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.
		658	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.				.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		L	P	Y	P	P	G	V	L	C	V	V	P	G	E	I	W	G	G	A	.	.	.	V	L	R	Y	F	S	A	L	E	E	G	I	N	L	L	P	G	F	A	P	E	L	Q	G	V	Y	I	E	E	H	D	G	R	K	Q	V	W	C	Y	V	I	K
Query Conservation																					.	.	.
Alig confidence																					.	.	.																													.					.	.
Template Conservation																																																				.					.	.
Template Sequence		L	P	Y	P	P	G	V	P	L	V	M	P	G	E	M	I	T	E	E	S	R	P	V	L	E	F	L	Q	M	L	C	E	I	G	A	H	Y	P	G	F	E	T	D	I	H	G	A	Y	R	Q	.	A	D	G	R	.	.	Y	T	V	K	V	L	K
Template Known Secondary structure					T	T		S			B		T	T					G	G	G														T	T	S	S	T	T							T					.	T	T	S		.	.
Template Predicted Secondary structure																																																				.					.	.
Template SS confidence
		650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.		700	.	.	.			.	.	.	.	.	.	710