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Job DescriptionP24169
Confidence99.93%DateThu Jan 5 11:40:44 GMT 2012
Rank23Aligned Residues347
% Identity14%Templatec3mafB_
PDB info PDB header:lyaseChain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form)
Resolution2.97 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   110.........120.........130.........140.........150.........160.........170.........180.........
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Query Sequence  PFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRADLCNADVAMGDLLIHEGAPCIAQQHAAKVFNA
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Template Sequence  PRAEILAEIAAMGAGAVYDEHH. . . . . . . IAFLNEVYALQSQSNPLHPDLWPSTAKF. . . . . . . . . EAEVVAMTAHMLGG
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TT
TTT
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   76...80.........90....... ..100.........110.........120..... ....130.........
 
   190... ......200.........210. ........220.........230.........240.........250......
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Query Sequence  DKTY. . . . . FVLNGTSSSNKVVLNALL. . . . . . . . TPGDLVLFDRNNHKSNHHGALLQAGATPVYLETARNPYGFIGGID
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Template Sequence  DAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDK. AAQYFGIKLVRTPLDADY. . . . . . . .
Template Known Secondary structure  TTTTS

SS

SS
TTS
T.T

B
TTS........
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   154.....160.........170.........180.........190.........200...... ...210.........220....
 
   257..260.........270.........280.........290.... .....300.........310.........320.........330.....
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Query Sequence  AHCFEESYLRELIAEVAPQRAKEARPFRLAVIQLGTYD. GTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCSP
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Template Sequence  . . RADVAAMREAITPNTVV. . . . . . . . . . VAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPV
Template Known Secondary structure  ..SB


TT..........TT
TTT




T
TTTTTTTTT


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   225....230.........240. ........250.........260.........270.........280.........290..
 
   336...340 .........350.........360.........370.........380.........390.........
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Query Sequence  LLLDL. . . NENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQQRYVPHKRMNNAFMMHASTSPFY. . . . . . . . . . . . .
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Template Sequence  PPFDFRLEGVT. . . . SVSADTHKYGYGAKGTSVILYRRP. . . . . . . . . . . . . . . DLLHYQYFIAADWPGGLYFSPTFAGS
Template Known Secondary structure 


STTSTT

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TTTTT


SS
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SS
TT

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SS
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   293......300... ......310.........320....... ..330.........340.........350...
 
   400.........410.........420.........430.........440.........450.........460.........470......
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Query Sequence  . . . PLFAALNINAKMHEGVSGRNMWMDCVVNGINARKLILDNCQHIRPFVPELVDGKPWQSYETAQIAVDLRFFQFVPGE
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Template Sequence  RPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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TSTT
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   354.....360.........370.........380.........390.........400..
 
   477..480.........490.........500.........510.........520.........530..... ....540....... ..550....
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Query Sequence  HWHSFEGYAENQYFVDPCKLLLTTPGIDARNGEYEAFGVPATILANFLRENGVVPEKCD. LNSILFLLTPAE. DMAKLQQ
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Template Sequence  . . . . . . . . . . . . . . . DPLWVIA. . . . . . . . . . . VASDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDR
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SS...........
SSS
TT


TTTT

GGGSSTT
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   403...... 410.........420.........430.........440.........450......
 
   555....560.........
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Query Sequence  LVALLVRFEKLLESD
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Template Sequence  FLADLQDAVAQVRAH
Template Known Secondary structure  T
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   457..460.........470.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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