Job Description P24169 Confidence 99.78% Date Thu Jan 5 11:40:44 GMT 2012 Rank 86 Aligned Residues 309 % Identity 12% Template c3ke3A_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase; PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution Resolution 2.20 Å

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		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		A	P	C	I	A	Q	Q	H	A	A	K	V	F	N	A	D	K	T	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	L	T	P	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	.	.	.	G	A	T	P	V	Y	L	E	T	A	R	N	P	Y	G	F
Query Conservation																																																															.	.	.
Alig confidence																																					.																										.	.	.
Template Conservation																																					.
Template Sequence		V	X	N	D	L	L	S	N	L	K	T	V	Y	N	A	E	A	A	V	I	I	P	G	S	G	T	Y	G	X	E	A	V	A	R	Q	.	L	T	I	D	E	D	C	L	I	I	R	N	G	W	F	S	Y	R	W	T	Q	I	L	E	K	G	K	F	A	K	S	S	T	V	L	T	A	E	R	T	E	D	T	E
Template Known Secondary structure															T		S							S													.			T	T									S																S	S										S	S			S
Template Predicted Secondary structure																																					.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.				.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.
Query SS confidence																																																.	.	.
Query Sequence		I	G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	T	Y	D	G	T	I	.	.	.	Y	N	A	R	Q	V	V	D	K	I	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G	Y	E	Q	F	I	P
Query Conservation																																																.	.	.
Alig confidence			.																									.	.	.	.	.	.	.	.													.	.	.
Template Conservation			.																									.	.	.	.	.	.	.	.
Template Sequence		A	.	P	K	P	F	A	P	V	D	I	E	T	A	V	A	K	I	K	E	D	K	S	A	I	V	.	.	.	.	.	.	.	.	Y	A	P	H	V	E	T	S	S	G	I	I	L	S	E	E	Y	I	K	A	L	S	E	A	V	H	S	V	G	G	L	L	V	I	D	C	I	A	S	G	C	V	W	L	D	X
Template Known Secondary structure		S	.																				T		S			.	.	.	.	.	.	.	.				S			T	T	T	T																		T	T								T	T		T	T
Template Predicted Secondary structure			.																									.	.	.	.	.	.	.	.
Template SS confidence
		114		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.									.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.												.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	M	A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	.	.	.	.	.	.	.	.	.	.	.	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M	M	H	A	S	T	S	P
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.							.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.							.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	K	E	L	G	I	D	.	.	.	.	V	L	I	S	A	P	Q	G	W	S	S	T	P	C	A	G	L	V	X	L	S	A	A	A	I	K	K	V	E	S	T	E	S	N	C	F	S	L	D	L	K	Q	W	L	T	I	X	R	A	Y	E	N	G	G	H	A	Y	H	A	T	X
Template Known Secondary structure		.	.	.	.	.	.	.	.	.				T		S	.	.	.	.											S																			T				S		S	T	T														T	T	S				S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.							.	.	.	.
Template SS confidence
											185	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	P	L	F	A	A	L	N	I	N	A	K	M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F	F	Q	F	V	P	G	E	H
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	T	D	S	L	R	Q	F	R	D	A	I	L	E	A	K	E	I	G	F	D	I	L	R	D	A	Q	W	E	L	G	N	R	V	R	K	V	L	T	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																																										T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.										.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.
Query Sequence		W	H	S	F	E	G	Y	A	E	N	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	A	N	F	L	R	E	N	G	V	V	P	.	.	.	.	.	.	.	.	.	E	K	C	D	L	N	S	I	L	F	L	L	T	P	A	E	D
Query Conservation																																																								.	.	.	.	.	.	.	.	.
Alig confidence		.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation		.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	G	I	E	S	V	A	A	E	G	F	E	A	P	G	V	V	V	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	R	D	D	X	H	K	G	S	A	F	A	E	A	G	L	Q	I	A	A	G	V	P	L	K	V	G	E	P	D	N	F	K	T	F	R	L	G	L	F	G	L	D	K
Template Known Secondary structure		.	.	T			B	S	B		T	T		B		S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.		S						S	S						T	T										S	S				T	T										S
Template Predicted Secondary structure		.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.															.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		549	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	K	L	Q	Q	L	V	A	L	L	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	D	I	D	G	T	V	E	R	F	E	K
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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