Job Description P24169 Confidence 99.38% Date Thu Jan 5 11:40:44 GMT 2012 Rank 217 Aligned Residues 317 % Identity 12% Template c3k7yA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: aspartate aminotransferase of plasmodium falciparum Resolution 2.80 Å

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		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.									.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.																						.
Query SS confidence																												.	.	.	.	.	.	.	.																						.
Query Sequence		D	L	L	I	H	E	G	A	P	C	I	A	Q	Q	H	A	A	K	V	F	N	A	D	K	T	Y	.	.	.	.	.	.	.	.	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	L	T	P	G	.	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	G	A	T
Query Conservation																												.	.	.	.	.	.	.	.																						.
Alig confidence																												.	.	.	.	.	.	.	.																						.																.
Template Conservation																																																																									.
Template Sequence		P	Y	L	L	G	N	G	T	E	D	F	S	T	L	T	Q	N	L	I	F	G	N	N	S	K	Y	I	E	D	K	K	I	C	T	I	Q	C	I	G	G	T	G	A	I	F	V	L	L	E	F	L	K	M	L	N	V	E	T	L	Y	V	T	N	P	P	Y	I	N	H	V	N	.	M	I	E	S	R	G	F	N
Template Known Secondary structure					T	T	S	S															S	S		T	T	T	T	T	T																							T	T	T								S	S								.				T	T	T
Template Predicted Secondary structure																																																																									.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																							.								.	.	.
Query SS confidence																																																							.								.	.	.
Query Sequence		P	V	Y	L	E	T	A	R	N	P	Y	G	F	I	G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	.	T	Y	D	G	T	I	Y	.	.	.	N	A	R	Q	V	V	D	K	I	G	H	L	C	D	Y	I
Query Conservation																																																							.								.	.	.
Alig confidence																.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.							.								.	.	.
Template Conservation																.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Sequence		L	K	Y	I	N	F	F	D	Y	N	L	I	D	I	.	.	.	.	.	.	.	.	N	Y	D	L	F	L	N	D	L	R	N	I	P	N	G	S	S	V	.	.	.	.	.	.	.	I	L	Q	I	S	C	Y	N	P	C	S	V	N	I	E	E	K	Y	F	D	E	I	I	E	I	V	L	H	K	K	H	V	I
Template Known Secondary structure										T	T	T	T			.	.	.	.	.	.	.	.												S		S	S				.	.	.	.	.	.	.					S	S		T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.									160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.								.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.			.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.
Predicted Secondary structure																																													.	.																																		.
Query SS confidence																																													.	.																																		.
Query Sequence		L	F	D	S	A	W	V	G	Y	E	Q	F	I	P	M	M	A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	.	.	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M	.	M
Query Conservation																																													.	.																																		.
Alig confidence											.	.																																	.	.																.	.	.	.	.	.	.												.
Template Conservation											.	.																																																		.	.	.	.	.	.	.
Template Sequence		I	F	D	I	A	Y	Q	G	F	.	.	G	H	T	N	L	E	E	D	V	L	L	I	R	K	F	E	E	K	N	I	A	F	S	V	C	Q	S	F	S	K	N	M	S	L	Y	G	E	R	A	G	A	L	H	I	V	C	K	N	Q	.	.	.	.	.	.	.	E	E	K	K	I	V	F	N	N	L	C	F	I
Template Known Secondary structure						S		T	T	T	.	.	S	S	S	S	T	T	G	G	G								T	T	T										T	T	T	S			T	T	T	T									S	S		.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.																																																		.	.	.	.	.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.								.	270	.	.	.	.	.	.	.	.	.	280	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	S	T	S	P	F	Y	P	L	F	A	A	L	N	I	N	A	K	M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F	F	Q
Query Conservation
Alig confidence																																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	K	F	Y	S	S	P	V	I	H	T	N	R	I	L	C	Q	L	L	N	N	Q	N	L	K	L	N	W	I	K	E	L	S	Q	L	S	Q	R	I	T	N	N	R	I	L	F	F	N	K	L	E	T	Y	Q	K	K	Y	N	L	N	Y	D	W	N	V	Y	K	K	Q	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T	T	S	S																																																G	G	G	G	T					G	G	G	G	S	S		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.		.	.	.	.	550
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		F	V	P	G	E	H	W	H	S	F	E	G	Y	A	E	N	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	A	N	F	L	R	E	N	G	V	V	P	E	K	C	D	L	N	S	I	L	F	L	L	T	P	.	A	E	D	M	A
Query Conservation																																																																												.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																		.	.	.	.	.	.					.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	L	F	S	F	V	P	L	L	A	.	K	I	A	E	H	L	K	T	H	H	I	Y	I	I	N	N	G	.	.	.	.	.	.	R	I	N	V	S	G	I	T	K	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S					G	G	G	G	.	G	G	T	T	T	T	T	T	T	T					T	T	S	.	.	.	.	.	.				G	G	G			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																		.	.	.	.	.	.
Template SS confidence
																																					352	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.							380	.	.	.	.	.	.	.	.	.
		551	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	Q	Q	L	V	A	L	L	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	D	Y	I	A	D	K	I	C	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions