Job Description P24169 Confidence 99.68% Date Thu Jan 5 11:40:44 GMT 2012 Rank 146 Aligned Residues 324 % Identity 13% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

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		179	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.					.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure													.	.	.																										.	.	.	.
Query SS confidence													.	.	.																										.	.	.	.
Query Sequence		A	Q	Q	H	A	A	K	V	F	N	A	.	.	.	D	K	T	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	L	T	P	G	.	.	.	.	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	G	A	T	P	V	Y	L	E	T	A	R	N	P	Y	G	F
Query Conservation													.	.	.																										.	.	.	.
Alig confidence													.	.	.																										.	.	.	.																.
Template Conservation																																																												.
Template Sequence		A	A	Y	I	T	R	R	D	G	G	V	P	A	D	P	D	N	I	Y	L	T	T	G	A	S	D	G	I	S	T	I	L	K	I	L	V	S	G	G	G	K	S	R	T	G	V	M	I	P	I	P	Q	Y	P	L	Y	S	A	.	V	I	S	E	L	D	A	I	Q	V	N	Y	Y	L	D	E	E	N	C	W	A
Template Known Secondary structure									T	T	T					G	G	G					S	S																	G	G	G	S								S			T					.					T	T									B	G	G	G	T	T	B
Template Predicted Secondary structure																																																												.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.				.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																										.							.	.	.																										.	.	.	.	.
Query SS confidence																																										.							.	.	.																										.	.	.	.	.
Query Sequence		I	G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	.	T	Y	D	G	T	I	.	.	.	Y	N	A	R	Q	V	V	D	K	I	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G	.	.	.	.	.
Query Conservation																																										.							.	.	.																										.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.																		.	.	.	.	.										.							.	.	.																										.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Sequence		L	.	.	.	.	.	.	.	.	N	V	N	E	L	R	R	A	V	Q	E	A	K	D	H	C	D	.	.	.	.	.	P	K	V	L	C	I	I	N	P	G	N	P	T	G	Q	V	Q	S	R	K	C	I	E	D	V	I	H	F	A	W	E	E	K	L	F	L	L	A	D	E	V	Y	Q	D	N	V	Y	S	P
Template Known Secondary structure			.	.	.	.	.	.	.	.													T	T	T	S		.	.	.	.	.								S	S		T	T	T																				T								T	T	T	T		B			T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.																		.	.	.	.	.
Template SS confidence
		243									.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260						.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.			.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.
Predicted Secondary structure																																											.	.																															.
Query SS confidence																																											.	.																															.
Query Sequence		Y	E	Q	F	I	P	M	M	A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	.	.	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M	M	H	A	.	S	T	S	P	F	Y
Query Conservation																																											.	.																															.
Alig confidence																											.																.	.									.	.	.	.	.	.	.	.	.														.
Template Conservation																											.																										.	.	.	.	.	.	.	.	.
Template Sequence		D	C	R	F	H	S	F	K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L	A	.	S	F	H	S	T	S	K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M	E	V	I	N	L	.	.	.	.	.	.	.	.	.	H	P	E	I	K	G	Q	L	V	K	L	L	S	V	R	L	C	P	P	V
Template Known Secondary structure		T													T						T	T					.					S	S	S	S	T	T			S	S	S									S		.	.	.	.	.	.	.	.	.															S
Template Predicted Secondary structure																											.																										.	.	.	.	.	.	.	.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.										360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410											.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.
Query Sequence		P	L	F	A	A	L	N	I	N	A	K	.	.	.	.	.	.	.	.	.	.	M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F
Query Conservation													.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.						.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	G	Q	A	A	M	D	I	V	V	N	P	P	V	A	G	E	E	S	F	E	Q	F	S	R	E	.	K	E	S	V	L	G	N	L	A	K	K	A	K	L	T	E	D	L	F	N	Q	V	P	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T					T	T	S	T	T								.																					T	S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.		.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540						.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.
Query Sequence		F	Q	F	V	P	G	E	H	W	H	S	F	E	G	Y	A	E	N	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	A	N	F	L	R	E	N	G	V	V	P	E	K	C	D	L	N	S	I	L	.	.	.	.	.	F	L	L	T
Query Conservation																																																																									.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.													.	.	.	.																																														.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	H	C	N	P	L	Q	G	A	M	Y	A	F	.	.	.	.	P	R	I	F	I	P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y	C	M	K	L	L	E	E	T	G	I	C	V	V	P	G	S	G	F	G	Q	R	E	G	T	Y	H	F	R	M	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.							B	S	S				.	.	.	.																T	T	S																B					G	G	G	T				T	T			B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
												431	.	.	.	.	.	.	.	.	440	.	.					.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	E	D	M	A	K	L	Q	Q	L	V	A	L	L	V	R	F	E	K	L	L	E	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	P	P	V	E	K	L	K	T	V	L	Q	K	V	K	D	F	H	I	N	F	L	E	K
Template Known Secondary structure				S
Template Predicted Secondary structure
Template SS confidence
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions