Job Description P24169 Confidence 99.41% Date Thu Jan 5 11:40:44 GMT 2012 Rank 212 Aligned Residues 309 % Identity 14% Template c3g7qA_ PDB info PDB header:transferase Chain: A: PDB Molecule:valine-pyruvate aminotransferase; PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution Resolution 1.80 Å

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		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.								.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																					.	.	.	.	.	.	.																																.	.
Query SS confidence																					.	.	.	.	.	.	.																																.	.
Query Sequence		L	I	H	E	G	A	P	C	I	A	Q	Q	H	A	A	K	V	F	N	.	.	.	.	.	.	.	A	D	K	T	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	L	T	P	G	D	L	V	L	F	.	.	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	G	A	T	P	V
Query Conservation																					.	.	.	.	.	.	.																																.	.
Alig confidence																					.	.	.	.	.	.	.																																.	.											.
Template Conservation																																																																							.
Template Sequence		Y	D	G	P	Q	G	K	T	A	L	L	N	A	L	A	V	L	L	R	E	T	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	S	T	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	.	D	L	F	V	S	A	R	P	N	I
Template Known Secondary structure		T	T		T	T	S																						G	G	G					S														S	B				B					S	S										.
Template Predicted Secondary structure																																																																							.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.				.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																					.							.	.	.
Query SS confidence																																																					.							.	.	.
Query Sequence		Y	L	E	T	A	R	N	P	Y	G	F	I	G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	.	T	Y	D	G	T	I	.	.	.	Y	N	A	R	Q	V	V	D	K	I	G	H	L	C	D	Y	I	L	F
Query Conservation																																																					.							.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.										.							.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	L	P	E	G	Q	F	.	.	.	.	.	.	.	.	.	.	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	.	.	.	.	.	.	.	.	.	.	T	G	X	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	X	K	L	D	R	L	A	N	Q	H	N	I	P	L	V	I
Template Known Secondary structure					G	G	G			.	.	.	.	.	.	.	.	.	.						G	G	G					T	T	.	.	.	.	.	.	.	.	.	.								S	S		T	T	T																			T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.											.	.	.	.	170	.	.	.	.	.	.	.	.	.											180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	A	W	V	G	Y	E	Q	F	I	P	M	M	A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M	M	H	A	S	T	S
Query Conservation
Alig confidence							.																				.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.																				.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	N	A	Y	G	.	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	.	.	.	.	.	.	I	L	C	X	S	L	S	K	L	G	L	P	G	S	R	C	G	I	I	I	.	.	.	.	.	.	.	.	.	.	.	.	A	N	D	K	T	I	T	A	I	A	N	X	N	G	I	I	S
Template Known Secondary structure				T	T		.	T	T	T	T			B		S								T	T		.	.	.	.	.	.						S	G	G	G	T		T	T	S							.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.																				.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		218	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.							.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.													.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	Y	P	L	F	A	A	L	N	I	N	A	K	M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F	F	Q	F	V	P	G	E
Query Conservation
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	P	G	G	X	G	P	A	X	X	C	E	X	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	Q	T	I	A	I	I	R	R	Y	L	S	E	E	R	C	L	I	H	K	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S												T	T									T																						T	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.												.	540	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	W	H	S	F	E	G	Y	A	E	N	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	A	N	F	L	R	E	N	G	V	V	P	E	K	C	D	L	N	S	.	.	.	.	.	.	.	.	.	.	.	I	L	F	L	L	T	P
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	I	F	L	W	L	.	.	.	.	.	.	.	.	.	.	W	F	K	D	L	P	I	T	T	E	L	L	Y	Q	R	L	K	A	R	G	V	L	X	V	P	G	H	Y	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	X	R	X	N	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	S	S					.	.	.	.	.	.	.	.	.	.			T	T		S	S												T	T						G	G	G	G		T	T	B	S	S			G	G	G	G	G						S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	337	.	.	340	.	.	.											.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	D	M	A	K	L	Q	Q	L	V	A	L	L	V	R	F	E	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	E	P	D	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions