Job Description P24169 Confidence 99.31% Date Thu Jan 5 11:40:44 GMT 2012 Rank 224 Aligned Residues 306 % Identity 11% Template c3g0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution Resolution 1.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		181	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure												.	.	.																											.	.	.	.
Query SS confidence												.	.	.																											.	.	.	.
Query Sequence		Q	H	A	A	K	V	F	N	A	D	.	.	.	K	T	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	L	T	P	G	D	L	.	.	.	.	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	G	A	T	P	V	Y	L	E	T	A	R	N	P	Y	G	F	I	G
Query Conservation												.	.	.																											.	.	.	.
Alig confidence												.	.	.																											.	.	.	.														.																							.
Template Conservation																																																										.																							.
Template Sequence		R	F	A	K	L	F	V	N	I	D	I	P	A	R	A	C	V	P	T	V	G	S	X	Q	G	C	F	V	S	F	L	V	A	N	R	T	H	K	N	R	E	Y	G	T	L	F	I	D	P	G	F	N	L	N	K	L	.	Q	C	R	I	L	G	Q	K	F	E	S	F	D	L	F	E	Y	R	G	E	K	L	.
Template Known Secondary structure														G	G	G					S														T	T	S		T	T		S								S								.						T								G	G	G	G		T	T			.
Template Predicted Secondary structure																																																										.																							.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.									.	.	.																														.
Query SS confidence																																								.									.	.	.																														.
Query Sequence		G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	.	T	Y	D	G	T	I	Y	N	.	.	.	A	R	Q	V	V	D	K	I	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G	Y	E	Q	F	I	P	.
Query Conservation																																								.									.	.	.																														.
Alig confidence		.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.										.									.	.	.																								.						.
Template Conservation		.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.																																													.
Template Sequence		.	.	.	.	.	.	.	R	E	K	L	E	S	Y	L	Q	T	G	Q	.	.	.	.	.	.	.	.	.	.	F	C	S	I	I	Y	S	N	P	N	N	P	T	W	Q	C	X	T	D	E	E	L	R	I	I	G	E	L	A	T	K	H	D	V	I	V	I	E	D	L	A	Y	F	G	.	X	D	F	R	K	D
Template Known Secondary structure		.	.	.	.	.	.	.									T	T	T		.	.	.	.	.	.	.	.	.	.								S	S		T	T	T																			T	T								T	T	T	T	.			T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.																																													.
Template SS confidence
									170	.	.	.	.	.	.	.	.	.	180	.											.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.
			329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.													.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure		.																																																								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																																								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	M	M	A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	.	.	.	.	.	.	.	.	.	.	.	.	R	M	N	N	A	F	M	M	H	A	S	T
Query Conservation		.																																																								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	S	H	P	G	E	P	L	Y	Q	P	S	V	A	N	Y	T	D	N	Y	I	L	A	L	S	S	S	A	F	S	Y	A	G	Q	R	I	G	V	L	X	I	S	G	K	L	Y	E	R	E	Y	P	D	L	E	E	S	F	G	R	L	R	F	G	E	A	L	S	S	S	A	L	Y	A	L	S	S	G	A	T	H
Template Known Secondary structure				S	T	T	S	S						G	G	G	T		S												S		G	G	G															B		G	G	G					S		S	B							T	T							S	S	S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	F	Y	P	L	F	A	A	L	N	I	N	A	K	M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F	F	Q	F	V	P	G
Query Conservation
Alig confidence															.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	Q	W	G	X	A	A	X	L	K	A	C	.	.	.	.	.	.	N	D	G	E	Y	N	F	R	D	S	V	I	E	Y	G	R	K	A	R	I	X	K	K	X	F	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															.	.	.	.	.	.		T	T	S																							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.							.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.				.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.							.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																																										.	.	.	.	.	.
Query SS confidence																					.	.	.																																										.	.	.	.	.	.
Query Sequence		E	H	W	H	S	F	E	G	Y	A	E	N	Q	Y	F	V	D	P	C	.	.	.	K	L	L	L	T	T	P	G	I	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	A	N	F	L	R	E	N	G	V	V	P	E	K	C	D	.	.	.	.	.	.	L	N	S	I	L	F	L	L	T	P	A
Query Conservation																					.	.	.																																										.	.	.	.	.	.
Alig confidence		.	.	.																	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.											.
Template Conservation		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.																																							.
Template Sequence		.	.	.	N	G	F	N	I	V	Y	D	K	D	G	N	E	P	L	A	D	G	F	Y	F	T	V	G	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	G	X	D	S	S	K	L	I	E	K	F	V	R	Y	G	X	C	A	I	T	L	K	T	T	G	S	K	R	N	E	A	X	R	I	C	T	S	L	.
Template Known Secondary structure		.	.	.	T	T				S	S				T	T					S	S	S							T	.	.	.	.	.	.	.	.	.	.	.	.	T													T	T						S	T	T	T	T				T	T							S	S	.
Template Predicted Secondary structure		.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.																																							.
Template SS confidence
					353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.													.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	M	A	K	L	Q	Q	L	V	A	L	L	V	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	E	S	Q	F	P	D	L	E	K	R	L	Q	X	L
Template Known Secondary structure		S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions