Job Description P24169 Confidence 99.57% Date Thu Jan 5 11:40:44 GMT 2012 Rank 189 Aligned Residues 313 % Identity 14% Template c3dxvA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase; PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae Resolution 2.21 Å

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		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.																							.	.
Query SS confidence																		.	.	.																							.	.
Query Sequence		H	E	G	A	P	C	I	A	Q	Q	H	A	A	K	V	F	.	.	.	N	A	D	K	T	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	.	.	L	L	T	P	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	G	A	T	P	V	Y	L	E	T	A	R
Query Conservation																		.	.	.																							.	.
Alig confidence																		.	.	.																							.	.																					.
Template Conservation																																																																	.
Template Sequence		S	N	A	P	A	V	T	L	A	E	R	L	L	A	S	F	P	G	E	G	T	H	K	I	W	F	G	H	S	G	S	D	A	N	E	A	A	Y	R	A	I	V	K	A	T	G	R	S	G	V	I	A	F	A	G	A	Y	H	G	C	T	V	G	.	S	M	A	F	S	G	L	I	L	L	P	Y	P	D	P	Y
Template Known Secondary structure																T	T	T		T	T	T							S	S																	S								T	T					S	S			.			T	T											S	S
Template Predicted Secondary structure																																																																	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.					.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																																	.	.					.	.	.	.
Query SS confidence																																																	.	.					.	.	.	.
Query Sequence		N	P	Y	G	F	I	G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	T	Y	.	.	D	G	T	I	.	.	.	.	Y	N	A	R	Q	V	V	D	K	I	G	H	L	C	D	Y	I	L	F	D	S	A	W
Query Conservation																																																	.	.					.	.	.	.
Alig confidence										.	.																						.	.	.	.	.	.	.	.									.	.					.	.	.	.
Template Conservation										.	.																						.	.	.	.	.	.	.	.
Template Sequence		R	P	Y	R	N	D	P	T	.	.	G	D	A	I	L	T	L	L	T	E	K	L	A	A	V	P	A	G	S	I	G	.	.	.	.	.	.	.	.	A	A	F	I	E	P	I	Q	S	D	G	G	L	I	V	P	P	D	G	F	L	R	K	F	A	D	I	C	R	A	H	G	I	L	V	V	C	D	E	V	K
Template Known Secondary structure		S		B	T	T	B	T	T	.	.	S													T	S		T	T				.	.	.	.	.	.	.	.						S	S	B	S	T	T	T	S	B				T	T												T	T								T	T
Template Predicted Secondary structure										.	.																						.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200									.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	Y	E	Q	F	I	P	M	M	A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M	M	H	A	S	T	S	P	F	Y	P
Query Conservation
Alig confidence												.	.	.											.	.	.	.						.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.											.	.	.	.						.	.																													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	L	A	R	S	G	R	L	H	.	.	.	C	F	E	H	E	G	F	V	P	D	.	.	.	.	I	L	V	L	G	.	.	K	G	L	G	G	G	L	P	L	S	A	V	I	A	P	A	E	I	L	D	C	A	S	A	F	A	M	Q	.	.	.	.	.	.	.	.	.	.	.	T	L	H	G	N	P	I
Template Known Secondary structure		T		T	T	T	T	S	S	S	S	.	.	.	G	G	G	G	T	T				S	.	.	.	.						.	.	G	G	G	G	T	T	S													T	S		S	S	S	S			.	.	.	.	.	.	.	.	.	.	.	T	T	T	T
Template Predicted Secondary structure												.	.	.											.	.	.	.						.	.																													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.				.	.	.	.	.	.	.	.	260	.					.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.												.	.	.	.	.	300	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	A	A	L	N	I	N	A	K	M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F	F	Q	F	V	P	G	E	H	W	H	S
Query Conservation
Alig confidence															.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	A	A	G	L	A	V	L	E	T	I	D	.	.	.	R	D	D	L	P	A	M	A	E	R	K	G	R	L	L	R	D	G	L	S	E	L	A	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															.	.	.		T	T																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.							.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.			.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure																									.	.	.	.	.	.																																	.	.
Query SS confidence																									.	.	.	.	.	.																																	.	.
Query Sequence		F	E	G	Y	A	E	N	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	.	.	.	.	.	.	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	A	N	F	L	R	E	N	G	V	V	P	E	K	C	D	.	.	L	N	S	I	L	F	L	L	T	P	A	E	D	M	A	K	L
Query Conservation																									.	.	.	.	.	.																																	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.																																	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	H	P	L	I	G	D	I	R	G	R	G	L	A	C	G	M	E	L	V	C	D	R	Q	S	R	E	P	A	R	A	E	T	A	K	L	I	Y	R	A	Y	Q	L	G	L	V	V	Y	Y	V	G	M	N	G	N	V	L	E	F	T	P	P	L	T	I	T	E	T	D	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.		T	T								T	T										T	T	T	T																		T							S	T	T	S									T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	L	V	A	L	L	V	R	F	E	K	L	L	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	K	A	L	D	L	L	D	R	A	F	S	E	L	S	A
Template Known Secondary structure														T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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