Job Description P24169 Confidence 99.78% Date Thu Jan 5 11:40:44 GMT 2012 Rank 88 Aligned Residues 221 % Identity 12% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.					.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																																												.	.	.	.
Query SS confidence																																																												.	.	.	.
Query Sequence		C	I	A	Q	Q	H	A	A	K	V	F	N	A	D	K	T	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	L	T	P	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	.	.	.	.	A	G	A	T	P	V	Y	L	E	T	A	R	N	P	Y	G	F	I
Query Conservation																																																												.	.	.	.
Alig confidence																								.																															.					.	.	.	.												.	.	.	.	.	.	.
Template Conservation																								.																															.																				.	.	.	.	.	.	.
Template Sequence		E	Q	F	E	E	M	V	C	S	I	E	G	A	A	G	S	A	A	F	G	S	G	.	M	G	A	I	S	S	S	T	L	A	F	L	Q	K	G	D	H	L	I	A	G	D	T	L	Y	G	C	T	V	S	.	L	F	T	H	W	L	P	R	F	G	I	E	V	D	L	I	D	T	S	.	.	.	.	.	.	.
Template Known Secondary structure													T		S						S	S		.									T	T	T			T	T							S	S								.									T	T								T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.																															.																				.	.	.	.	.	.	.
Template SS confidence
		1562	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.		.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.		.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	.	T	Y	D	G	T	I	Y	N	A	R	Q	V	V	D	K	I	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G	Y	E	Q	F	I	P	M	M	A
Query Conservation																																									.
Alig confidence		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.									.																																						.	.	.
Template Conservation		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																																															.	.	.
Template Sequence		.	.	.	.	.	.	.	.	D	V	E	K	V	K	A	A	W	K	P	N	T	.	.	.	.	.	.	.	.	.	.	K	M	V	Y	L	E	S	P	A	N	P	T	C	K	V	S	D	I	K	G	I	A	V	V	C	H	E	R	G	A	R	L	V	V	D	A	T	F	T	S	P	C	F	L	K	P	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	S										T	T		.	.	.	.	.	.	.	.	.	.							S	S		T	T	T																	T								T	T	T		T	T	T			G	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																																															.	.	.
Template SS confidence
										1633	.	.	.	.	.	.	1640	.	.	.	.	.											.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.			.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	.	.	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M	M	H	A	S	T	S	P	F	Y	P	L	F	A	A	L	N	I	N	A
Query Conservation																																	.	.
Alig confidence		.	.	.	.	.	.							.	.	.	.																.	.										.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.							.	.	.	.																											.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	L	E	L	G	A	D	.	.	.	.	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S	S	A	K	T	A	.	.	.	.	.	.	.	.	E	D	I	A	T	I	K	F	Y	R	K	D	A	G	S	L	.	.	.	.	.	.	M	A	P	M	D	A	F	L
Template Known Secondary structure		.	.	.	.	.	.	G	G	G	T		S	.	.	.	.						T	T	T	T	T	T		S	S	S									S	S		.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.							.	.	.	.																											.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template SS confidence
								1692	.	.	.	.	.					.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.									.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.							1740	.	.	.	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	A	R	G	M	K	T	L	P	I	R	M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	V	N	H	P	G	L	E	S
Template Known Secondary structure							T	T																					T		T	T							T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		1748	.	1750	.	.	.	.	.	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions