Job Description P24169 Confidence 99.49% Date Thu Jan 5 11:40:44 GMT 2012 Rank 202 Aligned Residues 293 % Identity 14% Template c2z61A_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable aspartate aminotransferase 2; PDBTitle: crystal structure of mj0684 from methanococcus jannaschii2 reveals its similarity in the active site to kynurenine3 aminotransferases Resolution 2.20 Å

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		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.								.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.
Query Sequence		L	I	H	E	G	A	P	C	I	A	Q	Q	H	A	A	K	V	F	N	.	.	.	.	.	.	.	A	D	K	T	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	L	T	P	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	G	A	T	P	V	Y	L
Query Conservation																					.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.																																										.
Template Conservation																																																																					.
Template Sequence		Y	T	D	S	R	G	I	L	E	L	R	E	K	I	S	E	L	Y	K	D	K	Y	K	A	D	I	I	P	D	N	I	I	I	T	G	G	S	S	L	G	L	F	F	A	L	S	S	I	I	D	D	G	D	E	V	L	I	Q	N	P	C	Y	P	C	Y	K	N	.	F	I	R	F	L	G	A	K	P	V	F	C
Template Known Secondary structure					T	T																	S	S					G	G	G					S	S															T	T							S	S			T					.					T	T
Template Predicted Secondary structure																																																																					.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	A	R	N	P	Y	G	F	I	G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	T	Y	D	G	T	I	Y	N	A	R	Q	V	V	D	K	I	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Sequence		D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	E	S	L	E	E	A	L	S	D	K	T	K	A	.	.	.	.	.	.	.	.	.	.	I	I	I	N	S	P	S	N	P	L	G	E	V	I	D	R	E	I	Y	E	F	A	Y	E	N	I	P	Y	I	I	S	D	E	I	Y	N	G
Template Known Secondary structure			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S										S	S				.	.	.	.	.	.	.	.	.	.					S	S		T	T	T																	S							T	T	T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		141	.																	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.											.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	Q	F	I	P	M	M	A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M	M	H	A	S	T	S	P	F	Y	P	L	F
Query Conservation
Alig confidence			.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	.	.	.	.	.	V	Y	E	G	K	C	Y	S	A	I	E	F	D	E	N	L	E	K	T	I	L	I	N	G	F	S	L	Y	A	M	T	G	W	R	I	G	Y	V	I	.	.	.	.	.	.	.	.	.	.	.	.	S	N	D	E	I	I	E	A	I	L	K	L	Q	Q	N	L	F	I	S	A	P	T	I
Template Known Secondary structure			.	.	.	.	.	B	S	S	S					G	G	G	T		T	T		S	S													G	G	G							.	.	.	.	.	.	.	.	.	.	.	.																	T	S	S	S
Template Predicted Secondary structure			.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		195						.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.													.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L	N	I	N	A	K	M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F	F	Q	F	V	P	G	E	H	W	H	S	F	E
Query Conservation
Alig confidence								.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Q	Y	A	A	L	.	.	K	A	F	E	K	E	T	E	R	E	I	N	S	M	I	K	E	F	D	R	R	R	R	L	V	L	K	Y	V	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	W	E
Template Known Secondary structure							G	.	.	G	G	G	S																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		B
Template Predicted Secondary structure								.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.																																						.	.	.	.
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520		.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.					540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure																																								.																				.	.	.	.
Query SS confidence																																								.																				.	.	.	.
Query Sequence		G	Y	A	E	N	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	.	A	N	F	L	R	E	N	G	V	V	P	E	K	C	D	L	N	S	I	.	.	.	.	L	F	L	L	T	P	A	E	D	M	A	K	L	Q	Q	L	V	A
Query Conservation																																								.																				.	.	.	.
Alig confidence											.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.										.																				.	.	.	.
Template Conservation											.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	N	N	P	I	G	A	Y	Y	.	.	.	.	V	F	P	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	G	E	D	G	R	E	F	A	Y	K	L	L	K	E	K	F	V	A	L	T	P	G	I	G	F	G	S	K	G	K	N	Y	I	R	I	S	Y	A	N	S	Y	E	N	I	K	E	G	L	E
Template Known Secondary structure							B	T	T		.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	B		S	S																				G	G	G	G		G	G	G	S	S	B							S
Template Predicted Secondary structure											.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.					.	310	.														.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		558	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	V	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	K	E	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions