Job Description P24169 Confidence 99.90% Date Thu Jan 5 11:40:44 GMT 2012 Rank 31 Aligned Residues 301 % Identity 14% Template c2w8wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser Resolution 2.14 Å

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		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	G	A	P	C	I	A	Q	Q	H	A	A	K	V	F	N	A	D	K	T	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	L	T	P	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	G	A	T	P	V	Y	L	E	T	A	R	N	P	Y	G	F
Query Conservation
Alig confidence																													.																																.															.	.	.	.	.	.
Template Conservation																													.																																.															.	.	.	.	.	.
Template Sequence		T	F	H	D	H	M	E	V	E	Q	A	L	R	D	F	Y	G	T	T	G	A	I	V	F	S	T	G	.	Y	M	A	N	L	G	I	I	S	T	L	A	G	K	G	E	Y	V	I	L	D	A	D	S	H	A	S	I	Y	D	G	.	C	Q	Q	G	N	A	E	I	V	R	F	R	H	N	.	.	.	.	.	.
Template Known Secondary structure																		T		S						S			.												S		T	T							T	T									.				S		S							T	T	.	.	.	.	.	.
Template Predicted Secondary structure																													.																																.															.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		I	G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	.	T	Y	D	G	T	I	Y	N	A	R	Q	V	V	D	K	I	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G	Y	E	Q	F	I	P	M	M
Query Conservation																																										.
Alig confidence		.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.									.
Template Conservation		.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	S	V	E	D	L	D	K	R	L	G	R	L	P	K	E	P	A	.	.	.	.	.	.	K	L	V	V	L	E	G	V	Y	S	M	L	G	D	I	A	P	L	K	E	M	V	A	V	A	K	K	H	G	A	M	V	L	V	D	E	A	H	S	M	G	F	F	G	P	N	G	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.												S		S	S	S		.	.	.	.	.	.							S			T	T	T	T															T	T								T	T	T	T	T	T	S	S	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template SS confidence
											180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.							.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M	M	H	A	S	T	S	P	F	Y	P	L	F	A	A	L	N	I	N	A	K
Query Conservation
Alig confidence															.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	Y	E	A	Q	G	L	E	G	Q	I	D	.	.	.	.	F	V	V	G	T	F	S	K	S	V	G	T	V	G	G	F	V	V	S	N	H	.	.	.	.	.	.	.	.	.	.	.	P	K	F	E	A	V	R	L	A	C	R	P	Y	I	F	T	A	S	L	P	P	S	V	V	A	T	A	T	T	S	I
Template Known Secondary structure							T	T		T	T	T		S	.	.	.	.						S	T	T	T	T		S	S									.	.	.	.	.	.	.	.	.	.	.	T	T	G	G	G										T	S	B
Template Predicted Secondary structure															.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.					.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.												.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure
Query SS confidence
Query Sequence		M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F	F	Q	F	V	P	G	E	H	W	H	S	F	E	G	Y	A	E	N	Q	Y	F
Query Conservation
Alig confidence							.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	K	L	M	T	.	A	H	E	K	R	E	R	L	W	S	N	A	R	A	L	H	G	G	L	K	A	M	G	F	R	L	G	T	E	T	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T	.																						T	T				S		S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.								.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.
Query Sequence		V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	A	N	F	L	R	E	N	G	V	V	P	E	K	C	D	L	.	.	.	.	.	.	.	N	S	I	L	F	L	L	T	P	A	E	D	M	A	K	L	Q	Q	L	V	A	L	L	V	R	F	E
Query Conservation																																																.	.	.	.	.	.	.
Alig confidence		.												.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.
Template Conservation		.												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	D	S	A	I	V	A	V	M	L	E	D	.	.	.	.	.	.	.	.	.	.	.	Q	E	Q	A	A	M	M	W	Q	A	L	L	D	G	G	L	Y	V	N	M	A	R	P	P	A	T	P	A	G	T	F	L	L	R	C	S	I	C	A	E	H	T	P	A	Q	I	Q	T	V	L	G	M	F	Q	A	A	G
Template Known Secondary structure		.		S	S							S	S	.	.	.	.	.	.	.	.	.	.	.														T	T								T	T	T	S		T	T										T	T
Template Predicted Secondary structure		.												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			346	.	.	.	350	.	.	.	.	.	.												.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		564	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		414	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions