Job Description P24169 Confidence 99.78% Date Thu Jan 5 11:40:44 GMT 2012 Rank 87 Aligned Residues 356 % Identity 16% Template c2qmaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus Resolution 1.81 Å

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		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		F	F	R	A	L	V	D	Y	V	N	Q	G	N	S	A	F	D	C	P	.	.	.	G	H	Q	G	G	E	F	F	R	R	H	P	A	G	N	Q	F	V	E	Y	F	G	E	A	L	F	R	A	D	L	C	N	A	D	V	A	M	G	D	L	L	I	H	E	G	A	P	C	I	A	Q	Q	H	A	A	K	V	F
Query Conservation																					.	.	.
Alig confidence																					.	.	.																																					.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.
Template Sequence		V	I	D	D	V	A	E	L	V	A	K	N	A	I	F	T	Q	H	P	D	C	I	A	H	L	H	T	P	P	L	X	P	A	V	A	A	E	A	X	I	A	A	L	N	Q	S	X	D	S	W	D	Q	A	S	S	A	T	Y	.	.	.	.	.	.	.	.	.	V	E	Q	K	V	V	N	W	L	C	D	K	Y
Template Known Secondary structure										T	G	G	G	S			T	T	S	T	T	B		S	S	S																						T	T		G	G	G							.	.	.	.	.	.	.	.	.													T
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.
Template SS confidence
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.										.	.	.	.	.	.	.	.	610	.	.	.	.
		188			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210																					.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.	240	.	.
Predicted Secondary structure			.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Query SS confidence			.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Query Sequence		N	.	.	A	D	K	T	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	P	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	G	A	.	.	.	T	P	V	Y	L
Query Conservation			.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.
Alig confidence			.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.								.	.	.
Template Conservation																																																																		.
Template Sequence		D	L	S	E	K	A	D	G	I	F	T	S	G	G	T	Q	S	N	Q	X	G	L	X	L	A	R	D	W	I	A	D	K	L	S	G	H	S	I	Q	K	L	G	L	P	D	Y	A	D	K	L	R	I	V	C	S	K	K	S	H	F	T	V	Q	K	.	S	A	S	W	X	G	L	G	E	K	A	V	X	T	V
Template Known Secondary structure		T			T	T							S	S																														S		T	T	G	G	G							T	T	S		T					.					T	T	S		G	G	G
Template Predicted Secondary structure																																																																		.
Template SS confidence
		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.		.	680	.	.	.	.	.	.	.	.	.	690	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		E	T	A	R	N	P	Y	G	F	I	G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	.	T	Y	D	G	T	I	Y	N	A	R	Q	V	V	D	K	I	G	H	L	C	D	Y	I	L	F	D	S	A	W	V
Query Conservation																																																			.
Alig confidence								.	.	.	.	.	.	.	.	.	.															.	.	.	.																.
Template Conservation								.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Sequence		D	A	N	A	D	G	.	.	.	.	.	.	.	.	.	.	T	X	D	I	T	K	L	D	E	V	I	A	Q	A	.	.	.	.	K	A	E	G	L	I	P	F	A	I	V	G	T	A	G	T	T	D	H	G	A	I	D	D	L	D	F	I	A	D	X	A	V	K	H	D	X	W	X	H	V	D	G	A	Y	G
Template Known Secondary structure			B		T	T	S	.	.	.	.	.	.	.	.	.	.		B													.	.	.	.			T	T										B	S		T	T	T			B														T								T	T	G
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template SS confidence
		694	.	.	.	.	.											700	.	.	.	.	.	.	.	.	.	710	.	.	.					.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Y	E	Q	F	I	P	M	M	A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M	M	H	A	S	T	S	P	F	Y	P	L
Query Conservation
Alig confidence								.	.	.														.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.														.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	L	I	L	S	.	.	.	S	H	K	S	R	L	K	G	V	E	R	A	H	.	.	.	.	S	I	S	V	D	F	H	K	L	F	Y	Q	T	I	S	C	G	A	L	L	V	N	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	F	K	F	L	L	K	R	F	D	A	L	K	V
Template Known Secondary structure		G	G	G	G	G	S	.	.	.	T	T	G	G	G	G	T	T	G	G	G		S	.	.	.	.						T	T	S	T	T				S	S							S		G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G	G	G					T
Template Predicted Secondary structure								.	.	.														.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		760	.	.	.	.	.				.	.	.	.	770	.	.	.	.	.	.	.	.					.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.																.	.	.	.	.	.	.	810	.	.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	A	L	N	I	N	A	K	M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F	F	Q	F	V	P	G	E	H	W	H	S	F
Query Conservation
Alig confidence							.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	X	T	X	Q	.	.	.	.	N	V	G	P	K	A	L	G	D	X	Y	D	H	L	L	A	Q	T	L	E	V	A	D	X	I	R	T	N	D	Q	F	E	L	L	A	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							.	.	.	.		T																									T		T	T					S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		842	.	.	.	.					.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.				.	530	.	.	.	.	.	.	.	.	.	540			.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.													.	.
Query SS confidence																																																	.	.	.													.	.
Query Sequence		E	G	Y	A	E	N	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	A	N	F	L	R	E	N	G	.	.	.	V	V	P	E	K	C	D	L	N	S	I	L	.	.	F	L	L	T	P	A	E	D	M	A	K	L	Q	Q	L	V
Query Conservation																																																	.	.	.													.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.											.	.	.													.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	S	L	S	T	V	L	F	R	A	T	H	E	T	A	D	L	D	E	L	N	K	.	.	.	.	.	.	A	L	R	L	E	A	L	T	R	G	I	A	V	L	G	E	T	I	V	D	G	K	T	A	L	K	F	T	I	L	N	P	C	L	T	T	S	D	F	E	S	L	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	S	S	S									S	S	S								.	.	.	.	.	.										T	S		B							T	T											T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template SS confidence
												884	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.							.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.
		557	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	L	V	R	F	E	K	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	K	I	N	X	L	A	V	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		948	.	950	.	.	.	.	.	.	.