Job Description P24169 Confidence 99.86% Date Thu Jan 5 11:40:44 GMT 2012 Rank 60 Aligned Residues 381 % Identity 14% Template c2okkA_ PDB info PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		F	F	R	A	L	V	D	Y	V	N	Q	G	N	S	A	F	D	C	P	.	.	.	G	H	Q	G	G	E	F	F	R	R	H	P	A	G	N	Q	F	V	E	Y	F	G	E	A	L	F	R	A	D	L	C	N	A	D	V	A	M	G	D	L	L	I	H	E	G	A	P	C	I	A	Q	Q	H	A	A	K	V	F
Query Conservation																					.	.	.
Alig confidence											.										.	.	.																																					.	.	.	.	.	.	.	.	.
Template Conservation											.																																																	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	M	H	C	Q	T	T	L	.	K	Y	A	I	K	T	G	H	P	R	Y	F	N	Q	L	S	T	G	L	D	M	V	G	L	A	A	D	W	L	T	S	T	A	N	T	N	M	F	T	Y	E	I	A	P	V	F	V	L	.	.	.	.	.	.	.	.	.	L	E	Y	V	T	L	K	K	M	R	E	I	I
Template Known Secondary structure											.			S			T	T	S	T	T			S	S	S	S																					S	S		T	T	T							.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.																																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.										.	.	.	.	220	.	.	.	.	.	.	.	.
		188	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.															210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Query SS confidence							.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Query Sequence		N	A	D	K	T	.	.	.	Y	F	V	L	N	G	T	S	S	S	N	K	V	V	L	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	T	P	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	L	Q	A	G	A	.	.	.	T	P	V	Y	L	E	T	A	R	N
Query Conservation							.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Alig confidence							.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.								.	.	.
Template Conservation																																																													.
Template Sequence		G	W	P	G	G	S	G	D	G	I	F	S	P	G	G	A	I	S	N	M	Y	A	M	M	I	A	R	F	K	M	F	P	E	V	K	E	K	G	M	A	A	L	P	R	L	I	A	F	T	S	E	H	S	H	F	S	L	K	K	.	G	A	A	A	L	G	I	G	T	D	S	V	I	L	I	K	C	D	E	R
Template Known Secondary structure		T		G	G	G		S						S	S																		T	T						G	G	G	S									T	T	S		T					.					T	T	S		G	G	G						B		T	T
Template Predicted Secondary structure																																																													.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		P	Y	G	F	I	G	G	I	D	A	H	C	F	E	E	S	Y	L	R	E	L	I	A	E	V	A	P	Q	R	A	K	E	A	R	P	F	R	L	A	V	I	Q	L	G	T	Y	D	.	G	T	I	Y	N	A	R	Q	V	V	D	K	I	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G	Y	E	Q	F
Query Conservation																																																	.
Alig confidence			.	.	.	.	.	.	.	.	.	.																.	.	.	.																		.
Template Conservation			.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Sequence		G	.	.	.	.	.	.	.	.	.	.	K	M	I	P	S	D	L	E	R	R	I	L	E	A	K	.	.	.	.	Q	K	G	F	V	P	F	L	V	S	A	T	A	G	T	T	V	Y	G	A	F	D	P	L	L	A	V	A	D	I	C	K	K	Y	K	I	W	M	H	V	D	A	A	W	G	G	G	L	L	M
Template Known Secondary structure		S	.	.	.	.	.	.	.	.	.	.		B														.	.	.	.		T	T										B	S		T	T	T			B														T								T	T	G	G	G	G	G	G
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		308											.	310	.	.	.	.	.	.	.	.	.	320	.	.	.					.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	M	M	A	D	C	S	P	L	L	L	D	L	N	E	N	D	P	G	I	L	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	S	H	I	K	G	Q	Q	R	Y	V	P	H	K	R	M	N	N	A	F	M	M	H	A	S	T	S	P	F	Y	P	L	F	A	A	L	N
Query Conservation
Alig confidence				.	.														.	.	.	.											.																																											.	.
Template Conservation				.	.														.	.	.	.											.																																											.	.
Template Sequence		S	R	.	.	K	H	K	W	K	L	S	G	V	E	R	A	N	.	.	.	.	S	V	T	W	N	P	H	M	M	G	.	V	P	L	Q	C	S	A	L	L	V	R	E	E	G	L	M	Q	N	C	N	Q	M	H	D	L	S	Y	D	T	G	D	K	A	L	Q	C	G	R	H	V	D	V	.	.	F	K	L	W
Template Known Secondary structure			T	.	.	T	T	G	G	G	G	T	T	G	G	G		S	.	.	.	.											.		S	S								S	S	T	T											G	G	G			G	G	G	S	S		S	S						.	.
Template Predicted Secondary structure				.	.														.	.	.	.											.																																											.	.
Template SS confidence
		374	.			.	.	.	.	380	.	.	.	.	.	.	.	.					.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440			.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	A	K	M	H	E	G	V	S	G	R	N	M	W	M	D	C	V	V	N	G	I	N	A	R	K	L	I	L	D	N	C	Q	H	I	R	P	F	V	P	E	L	V	D	G	K	P	W	Q	S	Y	E	T	A	Q	I	A	V	D	L	R	F	F	Q	F	V	P	G	E	H	W	H	S	F	E	G	Y	A	E
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	M	W	R	A	K	G	T	T	G	F	E	A	H	V	D	K	C	L	E	L	A	E	Y	L	Y	N	I	I	K	N	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	E	M	V	F	D
Template Known Secondary structure																																T	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T				S	S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.																																									490	.	.	.	.	.	.
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.					530	.	.	.	.	.	.	.	.	.	540	.	.	.			.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure																																													.	.	.	.															.	.
Query SS confidence																																													.	.	.	.															.	.
Query Sequence		N	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	R	N	G	E	Y	E	A	F	G	V	P	A	T	I	L	A	N	F	L	R	E	N	G	V	.	.	.	.	V	P	E	K	C	D	L	N	S	I	L	F	L	L	.	.	T	P	A	E	D	M	A	K	L	Q	Q	L	V	A	L	L	V
Query Conservation																																													.	.	.	.															.	.
Alig confidence																																													.	.	.	.															.	.
Template Conservation
Template Sequence		G	K	P	Q	H	T	N	V	C	F	W	Y	I	P	P	S	L	R	T	L	E	E	R	M	S	R	L	S	K	V	A	P	V	I	K	A	R	M	M	E	Y	G	T	T	M	V	S	Y	Q	P	L	G	D	K	V	N	F	F	R	M	V	I	S	N	P	A	A	T	H	Q	D	I	D	F	L	I	E	E	I	E
Template Known Secondary structure		S			S	S	S									T	T	T	T	T									T	T													T	S									T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
		561	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	E	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	G	Q	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		580	.	.	.	.