Job Description P0A901 Confidence 100.00% Date Thu Jan 5 11:09:03 GMT 2012 Rank 4 Aligned Residues 156 % Identity 19% Template c3fmzB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:retinol-binding protein 4; PDBTitle: crystal structure of retinol-binding protein 4 (rbp4) in2 complex with non-retinoid ligand Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		S	S	P	T	P	P	R	G	V	T	V	V	N	N	F	D	A	K	R	Y	L	G	T	W	Y	E	I	A	R	F	D	H	R	F	E	R	G	L	E	K	V	T	A	T	Y	S	L	R	D	D	G	G	L	N	V	I	N	K	G	Y	N	P	D	.	R	G	M	W	Q	Q	S	E	G	K	A	Y	F	T	G	A
Query Conservation																																																																	.
Alig confidence																																																																	.
Template Conservation
Template Sequence		E	R	D	C	R	V	S	S	F	R	V	K	E	N	F	D	K	A	R	F	S	G	T	W	Y	A	M	A	K	K	D	P	E	G	L	F	L	Q	D	N	I	V	A	E	F	S	V	D	E	T	G	Q	M	S	A	T	A	K	G	R	V	R	L	L	N	N	W	D	V	C	A	D	M	V	G	T	F	T	D	T
Template Known Secondary structure						B	G	G	G					T	T																			S	S															S	S														S	S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		99	100	.	.	.	.	.	.	.	.							.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.								.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure												.	.	.	.	.	.																	.								.	.	.	.	.	.	.																.
Query SS confidence												.	.	.	.	.	.																	.								.	.	.	.	.	.	.																.
Query Sequence		P	T	R	A	A	L	K	V	S	F	.	.	.	.	.	.	F	G	P	F	Y	G	G	Y	N	V	I	A	L	D	R	E	.	Y	R	H	A	L	V	C	.	.	.	.	.	.	.	G	P	D	R	D	Y	L	W	I	L	S	R	T	P	T	.	I	S	D	E	V	K	Q	E	M	L	A	V	A	T	R	E	G
Query Conservation												.	.	.	.	.	.																	.								.	.	.	.	.	.	.																.
Alig confidence												.	.	.	.	.	.																	.								.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		E	D	P	A	K	F	K	M	K	Y	W	G	V	A	S	F	L	Q	K	G	N	D	D	H	W	I	V	D	T	D	Y	D	T	Y	A	V	Q	Y	S	C	R	L	L	N	L	D	G	T	C	A	D	S	Y	S	F	V	F	S	R	D	P	N	G	L	P	P	E	A	Q	K	I	V	R	Q	R	Q	E	E	L	C
Template Known Secondary structure		S	S	T	T										S	S																S	S	S												T	T	S	B											S	S	T	T																		T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		164	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	V	S	K	F	I	W	V	Q	Q	P	G
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		L	A	R	.	Q	Y	R	L	I	V	H	N	G
Template Known Secondary structure			T	T	.	T
Template Predicted Secondary structure					.
Template SS confidence
		161	.	.		.	.	.	.	.	.	170	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions