Job Description P0A901 Confidence 99.18% Date Thu Jan 5 11:09:03 GMT 2012 Rank 45 Aligned Residues 153 % Identity 12% Template c2wewA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein m; PDBTitle: crystal structure of human apom in complex with myristic2 acid Resolution 1.95 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.						.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																					.	.	.	.																.	.	.	.	.
Query SS confidence																					.	.	.	.																.	.	.	.	.
Query Sequence		S	P	T	P	P	R	G	V	T	V	V	N	N	F	D	A	K	R	Y	.	.	.	.	L	G	T	W	Y	E	I	A	R	F	D	H	R	F	E	.	.	.	.	.	R	G	L	E	K	V	T	A	T	Y	S	L	R	D	D	G	G	L	N	V	I	N	K	G	Y	N	P	D	R	G	M	W	Q	Q	S	E	G
Query Conservation																					.	.	.	.																.	.	.	.	.
Alig confidence																					.	.	.	.																.	.	.	.	.
Template Conservation
Template Sequence		N	Q	C	P	E	H	S	Q	L	T	T	L	G	V	D	G	K	E	F	P	E	V	H	L	G	Q	W	Y	F	I	A	G	A	A	P	T	K	E	E	L	A	T	F	D	P	V	D	N	I	V	F	N	M	A	A	G	S	A	P	M	Q	L	H	L	R	A	T	I	R	M	K	D	G	L	C	V	P	R	K	W
Template Known Secondary structure									B			S		S	T	T	G	G	G	T	T	G	G	G												S	S	G	G	G	T	G	G	G	T	T												S	S	T	T											T	T	S
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	Y	F	T	G	A	P	T	R	A	A	L	K	V	S	F	F	G	P	F	Y	G	G	Y	N	V	I	A	L	D	R	E	Y	R	H	A	L	V	C	G	P	D	R	D	Y	L	W	I	L	S	R	T	P	T	I	S	D	E	V	K	Q	E	M	L	A	V	A	T	R	E	G	F	D	V	S	K	F	I	W
Query Conservation
Alig confidence															.	.	.																																																											.
Template Conservation															.	.	.																																																											.
Template Sequence		I	Y	H	L	T	E	G	S	T	D	L	R	T	.	.	.	E	G	R	P	D	M	K	T	E	L	F	S	S	S	C	P	G	G	I	M	L	N	E	T	G	Q	G	Y	Q	R	F	L	L	Y	N	R	S	P	H	P	P	E	K	C	V	E	E	F	K	S	L	T	S	C	L	D	S	K	.	A	F	L	L	T
Template Known Secondary structure							T	T				B			.	.	.	S	S		T	T									S	S	T	T									T	T									S	S	S	S																T	T			.
Template Predicted Secondary structure															.	.	.																																																											.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.				.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.
		172	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	Q	P	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	R	N	Q	E	A
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions