Job Description P0A901 Confidence 99.97% Date Thu Jan 5 11:09:03 GMT 2012 Rank 12 Aligned Residues 152 % Identity 30% Template c2hzqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:apolipoprotein d; PDBTitle: crystal structure of human apolipoprotein d (apod) in2 complex with progesterone Resolution 1.80 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	P	R	G	V	T	V	V	N	N	F	D	A	K	R	Y	L	G	T	W	Y	E	I	A	R	F	D	H	R	F	E	R	G	L	E	K	V	T	A	T	Y	S	L	R	D	D	G	G	L	N	V	I	N	K	G	Y	N	P	D	R	G	M	W	Q	Q	S	E	G	K	A	Y	F	T	G	A	P	T	R	A
Query Conservation
Alig confidence																																				.																						.
Template Conservation																																				.																						.
Template Sequence		G	K	C	P	N	P	P	V	Q	E	N	F	D	V	N	K	Y	P	G	R	W	Y	E	I	E	K	I	P	T	T	F	E	N	G	.	R	C	I	Q	A	N	Y	S	L	X	E	N	G	K	I	K	V	L	N	Q	E	.	L	R	A	D	G	T	V	N	Q	I	E	G	E	A	T	P	V	N	L	T	E	P	A
Template Known Secondary structure		S	S								T	T			G	G	G	S												S		S	S			.											T	T	S									.			T	T	S												S		S	S		T	T
Template Predicted Secondary structure																																				.																						.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		103	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.						.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure											.														.								.	.	.	.	.
Query SS confidence											.														.								.	.	.	.	.
Query Sequence		A	L	K	V	S	F	F	G	P	.	F	Y	G	G	Y	N	V	I	A	L	D	R	E	.	Y	R	H	A	L	V	C	.	.	.	.	.	G	P	D	R	D	Y	L	W	I	L	S	R	T	P	T	I	S	D	E	V	K	Q	E	M	L	A	V	A	T	R	E	G	F	D	V	S	K	F	I	W	V	Q	Q	P
Query Conservation											.														.								.	.	.	.	.
Alig confidence											.														.								.	.	.	.	.
Template Conservation
Template Sequence		K	L	E	V	K	F	S	W	F	X	P	S	A	P	Y	H	I	L	A	T	D	Y	E	N	Y	A	L	V	Y	S	C	T	S	I	S	Q	S	F	H	V	D	F	A	W	I	L	A	R	N	V	A	L	P	P	E	T	V	D	S	L	K	N	I	L	T	S	N	N	I	D	V	K	K	X	T	V	T	D	Q	V
Template Known Secondary structure								S	T	T	S												S	S	S										S	S	T	T											S	S	S																	T	T				T	T							S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		176
Predicted Secondary structure
Query SS confidence
Query Sequence		G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		164

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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