Job Description P03023 Confidence 99.89% Date Thu Jan 5 10:57:56 GMT 2012 Rank 62 Aligned Residues 254 % Identity 13% Template c3rotA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein; PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila Resolution 1.91 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		L	I	G	V	A	T	S	S	L	A	L	H	A	P	S	Q	I	V	A	A	I	K	S	R	A	D	Q	L	G	A	S	V	V	V	S	M	.	V	E	R	S	G	V	E	A	C	K	A	A	V	H	N	L	L	A	Q	R	V	S	G	L	I	I	N	Y	P	L	D	D	Q	D	A	I	A	V	E	A	A	C	T
Query Conservation																																						.
Alig confidence																																						.
Template Conservation
Template Sequence		K	Y	Y	L	I	T	H	G	S	Q	D	P	Y	W	T	S	L	F	Q	G	A	K	K	A	A	E	E	L	K	V	D	L	Q	I	L	A	P	P	G	A	N	D	V	P	K	Q	V	Q	F	I	E	S	A	L	A	T	Y	P	S	G	I	A	T	T	I	P	S	D	T	A	F	S	K	S	L	Q	R	A	N	K
Template Known Secondary structure								S				S																		T									S	S	S																T			S									S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.							.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																.	.	.	.	.	.																						.	.
Query SS confidence																.	.	.	.	.	.																						.	.
Query Sequence		N	V	P	A	L	F	L	D	V	S	D	Q	T	P	.	.	.	.	.	.	I	N	S	I	I	F	S	H	E	D	G	T	R	L	G	V	E	H	L	V	A	.	.	L	G	H	Q	Q	I	A	L	L	A	G	P	L	S	S	V	S	A	R	L	R	L	A	G	W	H	K	Y	L	T	R	N	Q	I	Q	P	I
Query Conservation																.	.	.	.	.	.																						.	.
Alig confidence																.	.	.	.	.	.																						.	.																																				.
Template Conservation																																																																																.
Template Sequence		L	N	I	P	V	I	A	V	D	T	R	P	K	D	K	T	K	N	P	Y	L	V	F	L	G	S	D	N	L	L	A	G	K	K	L	G	E	K	A	L	E	L	T	P	S	A	K	R	A	L	V	L	N	P	Q	P	G	H	I	G	L	E	K	R	A	Y	G	I	K	T	I	L	Q	D	K	G	I	F	.	F
Template Known Secondary structure			T							S				S		T	T	T	S			S																							T	T									S		T	T																		T	T			.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.
Predicted Secondary structure																																																		.																									.	.	.
Query SS confidence																																																		.																									.	.	.
Query Sequence		A	E	R	E	G	D	W	S	A	M	S	G	F	Q	Q	T	M	Q	M	L	N	E	G	I	V	P	T	A	M	L	V	A	N	D	Q	M	A	L	G	A	M	R	A	I	T	E	S	G	.	L	R	V	G	A	D	I	S	V	V	G	Y	D	D	T	E	D	S	S	C	Y	I	P	P	.	.	.	L	T	T	I
Query Conservation																																																		.																									.	.	.
Alig confidence																																																		.																									.	.	.
Template Conservation
Template Sequence		E	E	L	D	V	G	T	D	P	N	Q	V	Q	S	R	V	K	S	Y	F	K	I	H	P	E	T	N	I	I	F	C	L	T	S	Q	A	L	D	P	L	G	Q	X	L	L	H	P	D	R	Y	D	F	N	Y	Q	P	Q	V	Y	S	F	D	K	T	P	N	T	V	S	L	I	H	K	K	L	V	N	Y	V	X
Template Known Secondary structure								S																	T	T							S	S													S					T																						T	T	S
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	D	F	R	L	L	G	Q	T	S	V	D	R	L	L	Q	L	S	Q	G	Q	A	V	K	G	N	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Q	Q	P	F	L	X	G	Y	L	S	I	T	Q	L	V	L	X	N	R	Y	Q	L	N	P	V	N	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions