Job Description P03023 Confidence 99.93% Date Thu Jan 5 10:57:56 GMT 2012 Rank 53 Aligned Residues 261 % Identity 17% Template c3ksmA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		L	I	G	V	A	T	S	S	L	A	L	H	A	P	S	Q	I	V	A	A	I	K	S	R	A	D	Q	L	G	A	S	V	V	V	S	M	V	.	.	E	R	S	G	V	E	A	C	K	A	A	V	H	N	L	L	A	Q	R	V	S	G	L	I	I	N	Y	P	L	D	D	Q	D	A	I	A	V	E	A	A	C
Query Conservation																																							.	.
Alig confidence																																							.	.
Template Conservation
Template Sequence		K	L	L	L	V	L	K	G	D	S	N	A	Y	W	R	Q	V	Y	L	G	A	Q	K	A	A	D	E	A	G	V	T	L	L	H	R	S	T	K	D	D	G	D	I	A	G	Q	I	Q	I	L	S	Y	H	L	S	Q	A	P	P	D	A	L	I	L	A	P	N	S	A	E	D	L	T	P	S	V	A	Q	Y	R
Template Known Secondary structure								S		S	S	S	T																	T									S	S	T	T																S			S							S	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150				.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.					.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.
Predicted Secondary structure												.	.	.																								.	.	.	.																																				.
Query SS confidence												.	.	.																								.	.	.	.																																				.
Query Sequence		T	N	V	P	A	L	F	L	D	V	.	.	.	S	D	Q	T	P	I	N	S	I	I	F	S	H	E	D	G	T	R	L	G	V	E	H	.	.	.	.	L	V	A	L	G	H	Q	Q	I	A	L	L	A	G	P	L	S	S	V	S	A	R	L	R	L	A	G	W	H	K	Y	L	T	R	N	.	Q	I	Q	P
Query Conservation												.	.	.																								.	.	.	.																																				.
Alig confidence												.	.	.																								.	.	.	.																																				.
Template Conservation
Template Sequence		A	R	N	I	P	V	L	V	V	D	S	D	L	A	G	D	A	H	Q	G	L	V	A	T	D	N	Y	A	A	G	Q	L	A	A	R	A	L	L	A	T	L	D	L	S	K	E	R	N	I	A	L	L	R	L	R	A	G	N	A	S	T	D	Q	R	E	Q	G	F	L	D	V	L	R	K	H	D	K	I	R	I
Template Known Secondary structure			T	T							S	S			S	S	S		S	S																						S		T	T	S								B			T	T																T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.				.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.
Query SS confidence																																																																								.	.	.
Query Sequence		I	A	E	R	E	G	D	W	S	A	M	S	G	F	Q	Q	T	M	Q	M	L	N	E	G	I	V	P	T	A	M	L	V	A	N	D	Q	M	A	L	G	A	M	R	A	I	T	E	S	G	L	R	V	G	A	D	I	S	V	V	G	Y	D	D	T	E	D	S	S	C	Y	.	.	.	I	P	P	L	T	T	I
Query Conservation																																																																								.	.	.
Alig confidence																																																			.	.																				.	.	.
Template Conservation																																																			.	.
Template Sequence		I	A	A	P	Y	A	G	D	D	R	G	A	A	R	S	E	X	L	R	L	L	K	E	T	P	T	I	D	G	L	F	T	P	N	E	S	T	T	I	G	A	L	V	A	I	R	Q	S	G	.	.	X	S	K	Q	F	G	F	I	G	F	D	Q	T	E	E	L	E	A	A	X	Y	A	G	E	I	S	N	L	V
Template Known Secondary structure						B			S	S																S									S														T	T	.	.		T	T	S	S						S											T	T	S	S	S
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	D	F	R	L	L	G	Q	T	S	V	D	R	L	L	Q	L	S	Q	G	Q	A	V	K	G	N	Q	L	L	P	V	S	L	V	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	N	P	E	Y	X	G	Y	L	A	V	Q	R	A	L	D	L	V	R	G	K	P	I	P	A	F	T	D	T	G	V	R	L	L	Q
Template Known Secondary structure																					T	T					S									S
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions