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Job DescriptionP03023
Confidence99.93%DateThu Jan 5 10:57:56 GMT 2012
Rank50Aligned Residues266
% Identity12%Templatec3g1wB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:sugar abc transporter; PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans
Resolution2.02 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80.........90.........100.........110.........120.........130.........140.
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Query Sequence  LLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACT
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Template Sequence  ETYXXITFQSGXDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKAVD
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STTSTT
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   43......50.........60.........70.........80.........90.........100.........110.........120..
 
   142.......150 .........160.........170.........180.........190.........200.........210.. ...
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Query Sequence  NVPALFLDV. . . . SDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQP. . IAE
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Template Sequence  AGIPIVLFDSGAPDSHAHSFLGTNNYNAGXNAAYKXAELLDGEGEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAV
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   123......130.........140.........150.........160.........170.........180.........190.........200..
 
   216...220.........230.........240.........250.........260.........270.........280..... ....290..
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Query Sequence  REGDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPP. . . LTTIKQD
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Template Sequence  EDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRLES. . RAGEIQIISFDTDKGTLDLVDEGIISATLAQG
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   203......210.........220.........230.........240........ .250.........260.........270.........280
 
   293......300.........310.... .....320.........
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Query Sequence  FRLLGQTSVDRLLQLSQGQAVK. . . . . . . . . . GNQLLPVSLVKRKTT
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Template Sequence  TWNXGYWSLTYLFHLHHGLTEPQILREEAPLPLYVDTGITIVTDENV
Template Known Secondary structure  TT
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B




B
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   281........290.........300.........310.........320.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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