Job Description P03023 Confidence 99.94% Date Thu Jan 5 10:57:56 GMT 2012 Rank 49 Aligned Residues 256 % Identity 13% Template c3brsA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator; PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans Resolution 2.00 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		T	S	S	L	A	L	H	A	P	S	Q	I	V	A	A	I	K	S	R	A	D	Q	L	G	A	S	V	V	V	S	M	.	V	E	R	S	G	V	E	A	C	K	A	A	V	H	N	L	L	A	Q	R	V	S	G	L	I	I	N	Y	P	L	D	D	Q	D	A	I	A	V	E	A	A	C	T	N	V	P	A	L
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		V	L	D	D	S	S	D	F	W	S	V	L	V	E	G	A	Q	M	A	A	K	E	Y	E	I	K	L	E	F	M	A	P	E	K	E	E	D	Y	L	V	Q	N	E	L	I	E	E	A	I	K	R	K	P	D	V	I	L	L	A	A	A	D	Y	E	K	T	Y	D	A	A	K	E	I	K	D	A	G	I	K	L
Template Known Secondary structure					S	S	S																		T									S	S	T	T															T			S							S		T	T	T	T					T	T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		147	.	.	150				.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure						.	.	.																											.	.
Query SS confidence						.	.	.																											.	.
Query Sequence		F	L	D	V	.	.	.	S	D	Q	T	P	I	N	S	I	I	F	S	H	E	D	G	T	R	L	G	V	E	H	L	V	A	.	.	L	G	H	Q	Q	I	A	L	L	A	G	P	L	S	S	V	S	A	R	L	R	L	A	G	W	H	K	Y	L	T	R	N	Q	I	Q	P	I	A	E	R	E	G	D	W	S
Query Conservation						.	.	.																											.	.
Alig confidence						.	.	.																											.	.
Template Conservation
Template Sequence		I	V	I	D	S	G	M	K	Q	D	I	A	D	I	T	V	A	T	D	N	I	Q	A	G	I	R	I	G	A	V	T	K	N	L	V	R	K	S	G	K	I	G	V	I	S	F	V	K	N	S	K	T	A	M	D	R	E	E	G	L	K	I	G	L	S	D	D	S	N	K	I	E	A	I	Y	Y	C	D	S	N
Template Known Secondary structure					S	S			S	S				S																						T	S	S	S								S		T	T	S															G	G	G	G	G	G								T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	S	G	F	Q	Q	T	M	Q	M	L	N	E	G	I	V	P	T	A	M	L	V	A	N	D	Q	M	A	L	G	A	M	R	A	I	T	E	S	G	L	R	V	G	A	D	I	S	V	V	G	Y	D	D	T	E	D	S	S	C	Y	I	P	P	L	T	T	I	K	Q	D	F	R	L	L	G	Q	T	S	V
Query Conservation
Alig confidence																																										.	.																		.	.
Template Conservation																																										.	.																		.	.
Template Sequence		Y	D	K	A	Y	D	G	T	V	E	L	L	T	K	Y	P	D	I	S	V	M	V	G	L	N	Q	Y	S	A	T	G	A	A	R	A	I	K	D	M	S	.	.	L	E	A	K	V	K	L	V	C	I	D	S	S	M	E	Q	E	.	.	G	I	F	E	A	M	V	V	Q	K	P	F	N	I	G	Y	L	G	V
Template Known Secondary structure																	T	T							S	S														T	T	.	.		T	T	T	S							S		S				.	.		S
Template Predicted Secondary structure																																										.	.																		.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	L	L	Q	L	S	Q	G	Q	A	V	K	G	N	Q	L	L	P	V	S	L	V	K	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	A	L	K	L	L	K	K	E	Y	V	P	K	Q	L	D	S	G	C	A	L	I	T	K	D
Template Known Secondary structure										T					S
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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