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Job DescriptionP03023
Confidence100.00%DateThu Jan 5 10:57:56 GMT 2012
Rank8Aligned Residues272
% Identity15%Templatec2iksA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:dna-binding transcriptional dual regulator; PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5960.........70.........80.........90.........100.........110.........120.........130........
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Query Sequence  KQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEA
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Template Sequence  GRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS. EDQPDNEXRCIEHLLQRQVDAIIVSTSLPPEHPFYQRW
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   5960.........70.........80.........90......... 100.........110.........120.........130.......
 
   139140......... 150.........160.........170.........180.........190.........200.........210.......
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Query Sequence  ACTNVPALFLD. VSDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAERE
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Template Sequence  ANDPFPIVALDRALDREHFTSVVGADQDDAEXLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYA
Template Known Secondary structure  TTSSS
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   138.140.........150.........160.........170.........180.........190.........200.........210.......
 
   218.220.........230.........240.........250.........260.........270.........280.........290.......
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Query Sequence  GDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLG
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Template Sequence  NSYEREAAAQLFEKWLETHPXPQALFTTSFALLQGVXDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVA
Template Known Secondary structure  SSS
TTTS


SSSSS

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GGGGG
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   218.220.........230.........240.........250.........260.........270.........280.........290.......
 
   298.300.........310.... .....320.........330.
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Query Sequence  QTSVDRLLQLSQGQAVK. . GNQLLPVSLVKRKTTLA
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Template Sequence  ERVLEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSR
Template Known Secondary structure  SSS





GGGG
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   298.300.........310.........320.........330...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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