Job Description P03023 Confidence 99.96% Date Thu Jan 5 10:57:56 GMT 2012 Rank 45 Aligned Residues 265 % Identity 22% Template c2fn9A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form Resolution 1.40 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	I	G	V	A	T	S	S	L	A	L	H	A	P	S	Q	I	V	A	A	I	K	S	R	A	D	Q	L	G	A	S	V	V	V	S	M	V	E	R	S	G	V	E	A	C	K	A	A	V	H	N	L	L	A	Q	R	V	S	G	L	I	I	N	Y	P	L	D	D	Q	D	A	I	A	V	E	A	A	C	T
Query Conservation
Alig confidence																																										.
Template Conservation																																										.
Template Sequence		G	K	M	A	I	V	I	S	T	L	N	N	P	W	F	V	V	L	A	E	T	A	K	Q	R	A	E	Q	L	G	Y	E	A	T	I	F	D	S	Q	N	.	D	T	A	K	E	S	A	H	F	D	A	I	I	A	A	G	Y	D	A	I	I	F	N	P	T	D	A	D	G	S	I	A	N	V	K	R	A	K	E
Template Known Secondary structure									S		S	S	S																	T	T									T	T	.															T	T		S							S		T	T	T	T
Template Predicted Secondary structure																																										.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		142	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.									.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.																															.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.																															.	.	.	.	.	.	.	.
Query Sequence		N	V	P	A	L	F	L	D	V	S	.	.	.	.	D	Q	T	P	I	N	S	I	I	F	S	H	E	D	G	T	R	L	G	V	E	H	L	V	A	L	G	H	Q	Q	.	.	.	.	.	.	.	.	I	A	L	L	A	G	P	L	S	S	V	S	A	R	L	R	L	A	G	W	H	K	Y	L	T	R	N	Q
Query Conservation												.	.	.	.																															.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	I	P	V	F	C	V	D	R	G	I	N	A	R	G	L	A	V	A	Q	I	Y	S	D	N	Y	Y	G	G	V	L	A	G	E	Y	F	V	K	F	L	K	E	K	Y	P	D	A	K	E	I	P	Y	A	E	L	L	G	I	L	S	A	Q	P	T	W	D	R	S	N	G	F	H	S	V	V	D	Q	Y	P
Template Known Secondary structure		T	T							S	S			S		S	S	S	S	S																											S	S		S											T	T																T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure		.																																																																			.
Query SS confidence		.																																																																			.
Query Sequence		.	I	Q	P	I	A	E	R	E	G	D	W	S	A	M	S	G	F	Q	Q	T	M	Q	M	L	N	E	G	I	V	P	T	A	M	L	V	A	N	D	Q	M	A	L	G	A	M	R	A	I	T	E	S	G	L	R	V	G	A	D	I	S	V	V	G	Y	D	D	.	T	E	D	S	S	C	Y	I	P	P	L	T
Query Conservation		.																																																																			.
Alig confidence		.																																																																			.
Template Conservation
Template Sequence		E	F	K	M	V	A	Q	Q	S	A	E	F	D	R	D	T	A	Y	K	V	T	E	Q	I	L	Q	A	H	P	E	I	K	A	I	W	C	G	N	D	A	M	A	L	G	A	M	K	A	C	E	A	A	G	R	T	D	I	Y	I	F	G	F	D	G	A	E	D	V	I	N	A	I	K	E	G	K	Q	I	V	A
Template Known Secondary structure		T										T	T																	T	T							S	S														T	T		T	T							B											T	T		S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		T	I	K	Q	D	F	R	L	L	G	Q	T	S	V	D	R	L	L	Q	L	S	Q	G	Q	A	V	.	K	G	N	Q	L	L	P	V	S	L	V	K	R	K
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		T	I	M	Q	F	P	K	L	M	A	R	L	A	V	E	W	A	D	Q	Y	L	R	G	E	R	S	F	P	E	I	V	P	V	T	V	E	L	V	T	R	E
Template Known Secondary structure																							T	T						S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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