Job Description P0ACS7 Confidence 95.64% Date Thu Jan 5 11:18:55 GMT 2012 Rank 85 Aligned Residues 137 % Identity 8% Template c2zkqb_ PDB info PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		T	I	M	E	G	Q	S	I	V	N	V	D	E	I	H	R	A	A	R	F	F	Y	Q	A	R	Q	R	D	L	Y	G	A	G	G	.	S	N	A	I	C	A	D	V	Q	H	K	F	L	R	I	G	V	R	C	Q	A	Y	P	D	A	H	I	M	M	M	S	A	S	L	L	Q	E	G	D	V	V	L	V	V	T
Query Conservation																																				.
Alig confidence											.	.																								.																									.	.
Template Conservation											.	.																																																	.	.
Template Sequence		N	L	K	R	T	W	E	K	L	.	.	L	L	A	A	R	A	I	V	A	I	E	N	P	A	D	V	S	V	I	S	S	R	N	T	G	Q	R	A	V	L	K	F	A	A	A	T	G	A	T	P	I	A	G	R	F	T	P	G	.	.	F	T	N	Q	I	Q	A	A	F	R	E	P	R	L	L	V	V	T	D
Template Known Secondary structure											.	.										S	S		G	G	G							S																					S	S					.	.				T	T		S	S					S					S
Template Predicted Secondary structure											.	.																																																	.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	G	R	T	S	D	V	K	A	A	V	E	L	A	K	K	N	G	A	K	I	I	C	I	T	H	S	Y	H	S	P	I	A	K	L	A	D	Y	I	I	C	S	P	A	P	E	T	P	L	L	G	R	N	A	S	A	R	I	L	Q	L	T	L	L	D	A	F	F	V	S	V	A	Q	L	N	I	E
Query Conservation
Alig confidence						.	.	.	.																									.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.																									.	.													.	.	.	.	.	.	.	.	.	.
Template Sequence		P	R	A	D	.	.	.	.	H	Q	P	L	T	E	A	S	Y	V	N	L	P	T	I	A	L	C	N	T	D	S	P	L	.	.	R	Y	V	D	I	A	I	P	C	N	N	K	.	.	.	.	.	.	.	.	.	.	G	A	H	S	V	G	L	M	W	W	M	L	A	R	E	V	L	R	M	R	G	T
Template Known Secondary structure		T	T	T	T	.	.	.	.											T									T	T				.	.	T	T		S					S		S	S	.	.	.	.	.	.	.	.	.	.																					S	S
Template Predicted Secondary structure						.	.	.	.																									.	.													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.											.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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