Job Description P0ACS7 Confidence 73.90% Date Thu Jan 5 11:18:55 GMT 2012 Rank 376 Aligned Residues 129 % Identity 14% Template c1tmoA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:trimethylamine n-oxide reductase; PDBTitle: trimethylamine n-oxide reductase from shewanella massilia Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		128	.	130	.	.	.	.	.	.	.	.	.	140							.	.	.	.	.	.	.	.	.	150	.	.	.	.						.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.															.	.	.	.	.																						.	.	.														.	.	.	.	.
Query SS confidence															.	.	.	.	.	.															.	.	.	.	.																						.	.	.														.	.	.	.	.
Query Sequence		V	D	E	I	H	R	A	A	R	F	F	Y	Q	.	.	.	.	.	.	A	R	Q	R	D	L	Y	G	A	G	G	S	N	A	.	.	.	.	.	I	C	A	D	V	Q	H	K	F	L	R	I	G	V	R	C	Q	A	Y	P	D	.	.	.	A	H	I	M	M	M	S	A	S	L	L	Q	E	.	.	.	.	.
Query Conservation															.	.	.	.	.	.															.	.	.	.	.																						.	.	.														.	.	.	.	.
Alig confidence															.	.	.	.	.	.															.	.	.	.	.																						.	.	.														.	.	.	.	.
Template Conservation
Template Sequence		D	K	A	L	T	L	F	K	H	S	L	D	E	V	Q	T	Q	Y	G	P	S	G	L	H	A	G	Q	T	G	W	R	A	T	G	Q	L	H	S	S	T	S	H	M	Q	R	A	V	G	M	H	G	N	Y	V	K	K	I	G	D	Y	S	T	G	A	G	Q	T	I	L	P	Y	V	L	G	S	T	E	V	Y	A
Template Known Secondary structure																			T		G	G	G											S		T	T	T												T	T				B						S	S	S	T	T									T	S	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
													189	190	.	.	.	.	.	.	.	.															.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	G	D	V	V	L	V	V	T	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	T	S	D	V	K	A	A	V	E	L	A	K	K	N	G	A	K	I	I	C	I	T	H	S	Y	H	S	P	I	A	K	L	A	D	Y	I	I	C	S	P	A	P	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	G	T	S	W	P	L	I	L	E	H	S	D	T	I	V	L	W	S	N	D	P	Y	K	N	L	Q	V	G	W	N	A	E	T	H	E	S	F	A	Y	L	A	Q	L	K	E	K	V	K	Q	G	K	I	R	V	I	S	I	D	P	V	V	T	K	T	Q	A	Y	L	G	C	E	Q	L	Y	V	N	P	Q	T
Template Known Secondary structure														S						S							T	S			S	S	B				T															T	S	S							S	S									T								T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	L	L	G	R	N	A	S	A	R	I	L	Q	L	T	L	L	D	A	F	F
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.
Template Sequence		D	V	T	.	.	.	.	.	.	.	.	.	L	M	L	A	I	A	H	E	M	I
Template Known Secondary structure					.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Template SS confidence
		249	250	.										.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions