Job Description P77277 Confidence 99.82% Date Thu Jan 5 12:27:07 GMT 2012 Rank 22 Aligned Residues 237 % Identity 19% Template c3qb0C_ PDB info PDB header:structural protein Chain: C: PDB Molecule:actin-related protein 4; PDBTitle: crystal structure of actin-related protein arp4 from s. cerevisiae2 complexed with atp Resolution 3.40 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50							.	.	.	.	.	.	.	.	.	60	.	.																						.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	V	D	L	G	T	C	D	V	V	S	M	V	V	D	R	D	G	.	.	.	.	.	.	Q	P	V	A	V	C	L	D	W	A	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	D	G	I	V	W	D	F	F	G	A	V	T	I	V	R	R	H	L	D	T
Query Conservation																					.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	I	D	P	G	S	Y	T	T	N	I	G	Y	S	G	S	D	F	P	Q	S	I	L	P	S	V	Y	G	K	Y	T	A	D	E	G	N	K	K	I	F	S	E	Q	S	I	G	I	P	R	K	D	Y	E	L	K	P	I	I	E	N	G	L	V	I	D	W	D	T	A	Q	E	Q	W	Q	W	A	L	Q	N
Template Known Secondary structure								S	S							T	T		S	S		S					S						S	S		S	S							T	T	G	G	G	S			T	T						S			T	T			S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																	.	.	.	.
Query SS confidence																																	.	.	.	.
Query Sequence		L	E	Q	Q	F	G	R	R	F	S	H	A	A	T	S	F	P	P	G	T	D	P	R	I	S	I	N	V	L	E	S	.	.	.	.	A	G	L	E	V	S	H	V	L	D	E	P	T	A	V	A	D	L	L	Q	L	D	N	A	G	V	V	D	I	G	G	G	T	T	G	I	A	I	V	K	K	G	K	V	T
Query Conservation																																	.	.	.	.
Alig confidence																																	.	.	.	.
Template Conservation
Template Sequence		E	L	Y	L	N	S	N	S	G	I	P	A	L	L	T	E	P	V	W	N	S	T	E	N	R	K	K	S	L	E	V	L	L	E	G	M	Q	F	E	A	C	Y	L	A	P	T	S	T	C	V	S	F	A	A	G	R	P	N	C	L	V	V	D	I	G	H	D	T	C	S	V	S	P	I	V	D	G	M	T	L
Template Known Secondary structure		T	S			S			T	T									T	T															T	T	S			S																T		S	S								S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		161			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.																																			.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure			.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	.	.	S	A	D	E	A	T	G	G	H	H	I	S	L	T	L	A	G	N	R	R	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	E	A	E	Q	Y	K	R	G	H	.	.	.	.	.	.	.	.	.	.
Query Conservation			.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	K	S	T	R	R	N	F	I	A	G	K	F	I	N	H	L	I	K	K	A	L	E	P	K	E	I	I	P	L	F	A	I	K	Q	R	K	P	E	F	I	K	K	T	F	D	Y	E	V	D	K	S	L	Y	D	Y	A	N	N	R	G	F	F	Q	E	C	K	E	T	L	C	H	I	C	P	T	K	T	L	E
Template Known Secondary structure		G	G	G					S		S												T	T	T	S					S	T	T					S	S	S							S	S														T									T					S	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
																											195	.	.	.	.	200	.	.	.	.	.	.	.	.																																						.	210	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	E	I	W	P	A	V	K	P	V	Y	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	A	D	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	T	K	T	E	L	S	S	T	A	K	R	S	I	E	S	P	W	N	E	E	I	V	F	D	N	E	T	R	Y	G	F	A	E	E	L	F	L	P	K	E	D	D	I	P	A	N	W	P	R	S	N	S	G	V	V	K	T	W	R	N	D	Y	V	P	L	K	R	T	K	N	N	E	L	I	G	L	A	D	L
Template Known Secondary structure									T									S	S	S																T	T	T	S			T	T	T	S		T	T	S				S	S							S
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.								.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.							.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.																						.	.	.	.	.	.											.	.	.
Query SS confidence														.	.	.	.	.	.	.																						.	.	.	.	.	.											.	.	.
Query Sequence		V	A	R	H	I	E	G	Q	G	I	T	D	.	.	.	.	.	.	.	L	W	L	A	G	G	S	C	M	Q	P	G	V	A	E	L	F	R	K	Q	F	.	.	.	.	.	.	P	A	L	Q	V	H	L	P	Q	H	.	.	.	S	L	F	M	T	P	L	A	I	A	S	S	G
Query Conservation														.	.	.	.	.	.	.																						.	.	.	.	.	.											.	.	.
Alig confidence														.	.	.	.	.	.	.																						.	.	.	.	.	.											.	.	.
Template Conservation
Template Sequence		V	Y	S	S	I	M	S	S	D	V	D	L	R	A	T	L	A	H	N	V	V	L	T	G	G	T	S	S	I	P	G	L	S	D	R	L	M	T	E	L	N	K	I	L	P	S	L	K	F	R	I	L	T	T	G	H	T	I	E	R	Q	Y	Q	S	W	L	G	G	S	I	L	T
Template Known Secondary structure								T	S		T	T	T						T	T					S	G	G	G	G	S	T	T													S	T	T	S								S		G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions