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Job DescriptionP77277
Confidence99.29%DateThu Jan 5 12:27:07 GMT 2012
Rank55Aligned Residues237
% Identity19%Templatec3jvpA_
PDB info PDB header:transferaseChain: A: PDB Molecule:ribulokinase; PDBTitle: crystal structure of ribulokinase from bacillus halodurans
Resolution2.31 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40....... ..50.........60 .........70.........80.........90...
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Query Sequence  PLWLGVDLGTCDVVSMVVD. RDGQPVAVCLDWA. . . . . . . . . . . . . . DVVRDGIVWDFFGAVTIVRRHLDTLEQQFGRRF
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Template Sequence  KYTIGVDYGTESGRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKEDADDV
Template Known Secondary structure 

SSTTT


TT

BSSBSTTS

B

TT


TT


S
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   94.....100....
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Query Sequence  SHAATSFPPGT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  IGIGVDFTACTMLPVDEEGQPLCLLAQYKDNPHSWVKLWKHHAAQDKANAINEMAEKRGEAFLPRYGGKISSEWMIAKVW
Template Known Secondary structure 
SS

TTS
BGGGSSSTTSSGGGS
TT

TTT
TTGGGGTT


SSS
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   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  QILDEAEDVYNRTDQFLEATDWIVSQMTGKIVKNSCTAGYKAIWHKREGYPSNEFFKALDPRLEHLTTTKLRGDIVPLGE
Template Known Secondary structure 
SSS

S

BTTTBS

TT
GGGTTSTTTTT
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TTS
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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   105....110.........120.........130..... ....140.........150...... ...160
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Query Sequence  . . . . . DPRISINVLESAGLEVSHVLDEPTAVADLLQ. LDNAGVVDIGGGTTGIAIVKK. . . . . . . . . . . . . . . . . . GKVT
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Template Sequence  RAGGLLPEMAEKMGLNPGIAVAVGNVDAHAAVPAVGVTTPGKLVMAMGTSICHMLLGEKEQEVEGMCGVVEDGIIPGYLG
Template Known Secondary structure 

TS
TT


TTTTTT

SSSSSSS



TT
STSSSTTS
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   248.250.........260.........270.........280.........290.........300.........310.........320.......
 
   161........170.........180.........190...
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Query Sequence  YSADEATGGHHISLTLAGNRRISLEEAEQYKRG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  YEAGQSAVGDIFAWFVKHGV. . SAATFDEAQEKGVNVHALLEEKASQLRPGESGLLALDWWNGNRSILVDTELSGMLLGY
Template Known Secondary structure  S
STS..
TT

TSS
TTSS



TT


TTT

SS




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   328.330.........340....... ..350.........360.........370.........380.........390.........400.....
 
   194.....200.........210........ .220.........230 .........240.........250.........260......
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Query Sequence  . HGEEIWPAVKPVYEKMADIVARHIE. . . . . GQGITDLWLAGG. SCMQPGVAELFRKQFPALQVHLPQHSLFMTPLAIAS
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Template Sequence  TLQTKPEEIYRALLEATAFGTRAIVDAFHGRGVEVHELYACGGLPQKNHLLMQIFADVT. NREIKVAASKQ. TPALGAAM
Template Known Secondary structure 
TT

TTT

SS
.TS
B

SS.
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   406...410.........420.........430.........440.........450.........460.... .....470..... ....480...
 
   267..
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Query Sequence  SGR
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Template Sequence  FAS
Template Known Secondary structure 
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   484..
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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