Job Description P77277 Confidence 99.74% Date Thu Jan 5 12:27:07 GMT 2012 Rank 25 Aligned Residues 240 % Identity 13% Template c3js6A_ PDB info PDB header:unknown function Chain: A: PDB Molecule:uncharacterized parm protein; PDBTitle: crystal structure of apo psk41 parm protein Resolution 1.95 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																																					.	.	.	.	.	50	.	.	.	.	.	.	.	.	.									60	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Query Sequence		E	S	P	L	W	L	G	V	D	L	G	T	C	D	V	V	S	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	D	R	D	G	Q	P	V	A	V	C	L	D	W	.	.	.	.	.	.	.	.	A	D	V
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	V	Y	V	X	A	L	D	F	G	N	G	F	V	K	G	K	I	N	D	E	K	F	V	I	P	S	R	I	G	R	K	T	N	E	N	N	Q	L	K	G	F	V	D	N	K	L	D	V	S	E	F	I	I	N	G	N	N	D	E	V	L	L	F	G	N	D	L	D	K	T	T	N	T	G	K	D	T	A
Template Known Secondary structure													S	S							T	T							S							S	S			S	S	T	T	T	S					S							T	T		T	T						S	T	T						S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																																		.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	D	G	I	V	W	D	F	F	G	A	V	T	I	V	R	R	H	L	D	T	L	E	Q	Q	F	G	R	R	F	S	.	H	A	A	T	S	F	P	P	G	T	D	P	R	I	S	I	N	V	L	E	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	V	S	H	V	L	D
Query Conservation																																		.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	T	N	D	R	Y	D	I	K	S	F	K	D	L	V	E	C	S	I	G	L	L	A	R	E	V	P	E	E	V	V	N	V	V	I	A	T	G	X	P	S	N	E	I	G	T	D	K	Q	A	K	F	E	K	L	L	N	K	S	R	L	I	E	I	D	G	I	A	K	T	I	N	V	K	G	V	K	I	V	A
Template Known Secondary structure			S	T	T	G	G	G	S																T	T	S		S	S												G	G	G	T	T	S											S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		126	.	.	.	130	.	.	.	.	.												.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.																										.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.																										.	.
Query Sequence		E	P	T	A	V	A	D	L	L	Q	.	.	.	.	.	.	.	.	.	.	.	L	D	N	A	G	V	V	D	I	G	G	G	T	T	G	I	A	I	V	K	K	G	K	V	T	.	.	Y	S	A	D	E	A	T	G	G	H	H	I	S	L	T	L	A	G	N	R	R	I	S	L	E	E	A	E	Q	Y	K	R
Query Conservation												.	.	.	.	.	.	.	.	.	.	.																										.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																										.	.																														.	.
Template Conservation																																																																															.	.
Template Sequence		Q	P	X	G	T	L	L	D	L	N	X	E	N	G	K	V	F	K	A	F	T	E	G	K	Y	S	V	L	D	F	G	S	G	T	T	I	I	D	T	Y	Q	N	X	K	R	V	E	E	E	S	F	V	I	N	K	G	T	I	D	F	Y	K	R	I	A	S	H	V	S	T	P	R	M	I	E	K	G	.	.	L
Template Known Secondary structure										T	T			T	T								T										S	S									T	T				G	G	G					S														T								S		.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		G	H	G	E	E	I	W	P	A	V	K	P	V	Y	E	K	M	A	D	I	V	A	R	H	I	E	G	.	Q	G	I	T	D	L	W	L	A	G	G	S	C	M	Q	P	G	V	A	E	L	F	R	K	Q	F	P	A	L	Q	V	H	L	P	Q	H	S	L	F	M	T	P	L	A	I	A	S	S	G	R	E	K
Query Conservation																													.
Alig confidence																													.																.	.										.
Template Conservation																																													.	.										.
Template Sequence		E	F	K	D	E	F	Y	K	E	Q	D	S	L	I	E	E	V	X	S	N	F	E	I	T	V	G	N	I	N	S	I	D	R	I	I	V	T	G	G	G	A	N	I	.	.	H	F	D	S	L	S	H	Y	Y	.	S	D	V	F	E	K	A	D	D	S	Q	F	S	N	V	R	G	Y	E	K	L	G	E	L	L
Template Known Secondary structure																										T			T	T	S		S						S	T	T				.	.									S	.	S	S						S	S	G	G	G
Template Predicted Secondary structure																																													.	.										.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions