|   |
33 | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | |
|
|
|
. | . | . | . | . | . | . | . | . | |
|
|
|
60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
| . | . | . | . |
|  |  |  |  |  |  |
|
| . | . | . | . |
|
|
|  |  |
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | V | D | L | G | T | C | D | V | V | S | M | V | V | D | R | D | G | . |
. |
. |
. |
Q | P | V | A | V | C | L | D | W | . |
. |
. |
. |
A | D | V | V | R | D | G | I | V | W | D | F | F | G | A | V | T | I | V | R | R | H | L | D | T | L | E | Q | Q | F | G | R | R | F | S | H | A | A | T | S | F | P | P | G | T |
Query Conservation |   |
|
|
|
|
|
|
|   |   |
|   |
|
|   |
|   |   |   | . | . | . | . |   |
|
|   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |
|   |
|   |
|   |   |   |
|   |   |   |
|
|   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |
|   |   |
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |
|   |
|   | . |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|
|
|
|   |
Template Sequence |   |
G | I | D | C | G | T | N | S | I | R | L | K | I | A | R | V | D | A | D | G | X | H | E | V | V | P | R | I | L | R | V | I | R | L | G | Q | D | V | D | K | T | H | R | F | A | . |
D | E | A | L | E | R | A | Y | V | A | A | R | E | F | A | G | V | I | A | E | H | P | I | D | G | L | R | F | V | A | T | S | A | T |
Template Known Secondary structure |   |
 |  |  |  |
| S | S |
|  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |
|
|
| T | T | T | T |  |  |  |  |
| S |
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|
| S |  |  |  |  |  |  |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | |
. | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
  |
  |   |
|
|
|
|
|
105 | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | |
|
|
|
|
|
. | . | 160 | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
| . | . | . | . | . | . |
|  |  |  |  |
|
Query SS confidence |   |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
D | P | R | I | S | I | N | V | L | E | S | A | G | L | E | V | S | H | V | L | D | E | P | T | A | V | A | D | L | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Q | L | D | N | A | G | V | V | D | I | G | G | G | T | T | G | I | A | I | V | K | K | G | . |
. |
. |
. |
. |
. |
K | V | T | Y | S | A |
Query Conservation |   |
. | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |
|
|   |
|   |   |
|
|
|   |   |   | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|
|
|
|
|
|   |   |
|   |
|   |
|   |   |   |
| . | . | . | . | . | . |   |   |   |   |   |   |
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |
|
|
|
|   |
|
|
|   |
|   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
R | D | A | E | N | R | E | E | F | E | D | E | I | E | R | I | L | G | V | R | P | E | V | I | P | G | T | E | E | A | D | L | S | F | L | G | A | T | S | V | V | N | R | D | D | L | P | A | P | Y | L | V | V | D | L | G | G | G | S | T | E | L | V | I | G | G | D | G | V | S | A | P | T | T | Q | V | Q | G | A | F |
Template Known Secondary structure |   |
 |  |
| T | T |  |  |  |  |  |  |  |  |  |  |  |  | S | S |
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |
|
| T | T | S |
| S | S |  |  |  |  |  |  |
| S | S |
|  |  |  |  |  |
|
|
| S | S | S | S |
| T | T | S |
|
|  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
99 | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . |
  |
  |   |
164 | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | E | A | T | G | G | H | H | I | S | L | T | L | A | G | N | R | R | I | S | L | E | E | A | E | Q | Y | K | R | G | H | G | E | E | I | W | P | A | V | K | P | V | Y | E | K | M | A | D | I | V | A | R | H | I | E | G | Q | G | I | T | D | L | W | L | A | G | G | S |
Query Conservation |   |
  |   |   |   |
|
|   |   |   |   |   |   |
|
|   |   |
|   |
|   |   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|   |
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|
Template Sequence |   |
S | X | N | I | G | S | V | R | X | T | E | R | H | L | T | N | D | P | P | T | Q | T | Q | I | D | E | A | V | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | V | D | E | H | I | D | E | A | F | R | T | V | D | A | G | K | A | R | T | I | I | G | V | S | G | T |
Template Known Secondary structure |   |
 |  | S |
|
|  |  |  |  |  |  |  | T |
|
| S | S | S |
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | S |
| G | G | G |
| S |  |  |  |  |  | S |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
179 | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . |
  |